Results 1 - 20 of 53 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28733 | 3' | -55.4 | NC_006146.1 | + | 4670 | 0.68 | 0.816858 |
Target: 5'- cUGGGCCGGGUggGCgaggCGGgGGCAGAUc- -3' miRNA: 3'- -ACCUGGUCCA--CGa---GUCaUCGUCUGag -5' |
|||||||
28733 | 3' | -55.4 | NC_006146.1 | + | 8437 | 0.7 | 0.712262 |
Target: 5'- gGGACCAGGagaGCUCGGgGGCGaGCUg -3' miRNA: 3'- aCCUGGUCCa--CGAGUCaUCGUcUGAg -5' |
|||||||
28733 | 3' | -55.4 | NC_006146.1 | + | 11428 | 0.67 | 0.894492 |
Target: 5'- aGGACCAGGccaaggugGCcaaGGUGGCGGccCUCa -3' miRNA: 3'- aCCUGGUCCa-------CGag-UCAUCGUCu-GAG- -5' |
|||||||
28733 | 3' | -55.4 | NC_006146.1 | + | 33334 | 0.67 | 0.86596 |
Target: 5'- gGGuCCGGGUGCUCcggGGCAGcCg- -3' miRNA: 3'- aCCuGGUCCACGAGucaUCGUCuGag -5' |
|||||||
28733 | 3' | -55.4 | NC_006146.1 | + | 38267 | 0.67 | 0.880678 |
Target: 5'- cUGGcuaagcACCuAGG-GCUCuGUGGCAGACa- -3' miRNA: 3'- -ACC------UGG-UCCaCGAGuCAUCGUCUGag -5' |
|||||||
28733 | 3' | -55.4 | NC_006146.1 | + | 43519 | 0.68 | 0.833995 |
Target: 5'- cGGGCCAGGcUGCcggccaccaUCAGUGG-GGugUCc -3' miRNA: 3'- aCCUGGUCC-ACG---------AGUCAUCgUCugAG- -5' |
|||||||
28733 | 3' | -55.4 | NC_006146.1 | + | 44557 | 0.73 | 0.568364 |
Target: 5'- gGGGCCGGG-GCUCcgGGUGGCuGGCg- -3' miRNA: 3'- aCCUGGUCCaCGAG--UCAUCGuCUGag -5' |
|||||||
28733 | 3' | -55.4 | NC_006146.1 | + | 47823 | 0.66 | 0.90105 |
Target: 5'- aUGGGCuCGGGcUGC-CAG-AGCGcGGCUCu -3' miRNA: 3'- -ACCUG-GUCC-ACGaGUCaUCGU-CUGAG- -5' |
|||||||
28733 | 3' | -55.4 | NC_006146.1 | + | 48339 | 0.67 | 0.86596 |
Target: 5'- gUGGGCCAGGcGUcCAGUcuggccAGCGGGC-Cg -3' miRNA: 3'- -ACCUGGUCCaCGaGUCA------UCGUCUGaG- -5' |
|||||||
28733 | 3' | -55.4 | NC_006146.1 | + | 50170 | 0.72 | 0.650841 |
Target: 5'- aGGACCAGGgggGCguuugCAcuuGcGGCGGGCUCg -3' miRNA: 3'- aCCUGGUCCa--CGa----GU---CaUCGUCUGAG- -5' |
|||||||
28733 | 3' | -55.4 | NC_006146.1 | + | 51447 | 0.7 | 0.751937 |
Target: 5'- gGGACCAcgcGGcagaacUGCUC-GUAGCAGcGCUCg -3' miRNA: 3'- aCCUGGU---CC------ACGAGuCAUCGUC-UGAG- -5' |
|||||||
28733 | 3' | -55.4 | NC_006146.1 | + | 51660 | 0.71 | 0.67147 |
Target: 5'- gGGGCCAGG-GC-CGGU-GCcgGGACUCa -3' miRNA: 3'- aCCUGGUCCaCGaGUCAuCG--UCUGAG- -5' |
|||||||
28733 | 3' | -55.4 | NC_006146.1 | + | 57822 | 0.66 | 0.930227 |
Target: 5'- cGaGGCCGGGUGCUCcaaccuccaGGCAGAgaCa -3' miRNA: 3'- aC-CUGGUCCACGAGuca------UCGUCUgaG- -5' |
|||||||
28733 | 3' | -55.4 | NC_006146.1 | + | 59251 | 0.7 | 0.751937 |
Target: 5'- aUGGGCCuGGGUGUUCAGggccUGGCcGACg- -3' miRNA: 3'- -ACCUGG-UCCACGAGUC----AUCGuCUGag -5' |
|||||||
28733 | 3' | -55.4 | NC_006146.1 | + | 61974 | 0.66 | 0.930227 |
Target: 5'- gGGGCCguugAGGcccacgucaccUGCUCGGUcgcuGCuGACUCg -3' miRNA: 3'- aCCUGG----UCC-----------ACGAGUCAu---CGuCUGAG- -5' |
|||||||
28733 | 3' | -55.4 | NC_006146.1 | + | 64241 | 0.67 | 0.894492 |
Target: 5'- cUGGGCCGGG-GCgggAGgGGCGuGGCUCg -3' miRNA: 3'- -ACCUGGUCCaCGag-UCaUCGU-CUGAG- -5' |
|||||||
28733 | 3' | -55.4 | NC_006146.1 | + | 65838 | 0.69 | 0.799035 |
Target: 5'- aUGGGCCAguGGUGaugUGGUgccgucccAGCGGACUCa -3' miRNA: 3'- -ACCUGGU--CCACga-GUCA--------UCGUCUGAG- -5' |
|||||||
28733 | 3' | -55.4 | NC_006146.1 | + | 67908 | 0.72 | 0.639465 |
Target: 5'- cUGGGCCucgugggagccgaAGGUGCUCAGgaaccaccgGGCAGAgaCg -3' miRNA: 3'- -ACCUGG-------------UCCACGAGUCa--------UCGUCUgaG- -5' |
|||||||
28733 | 3' | -55.4 | NC_006146.1 | + | 99599 | 0.71 | 0.67147 |
Target: 5'- gGGGCCGcGGUGCUCugcGUAGCAcgaGGCg- -3' miRNA: 3'- aCCUGGU-CCACGAGu--CAUCGU---CUGag -5' |
|||||||
28733 | 3' | -55.4 | NC_006146.1 | + | 99791 | 0.66 | 0.924878 |
Target: 5'- gGGGCgCAGGUGuCUCGGaagGGCAccGGCg- -3' miRNA: 3'- aCCUG-GUCCAC-GAGUCa--UCGU--CUGag -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home