miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28733 3' -55.4 NC_006146.1 + 33334 0.67 0.86596
Target:  5'- gGGuCCGGGUGCUCcggGGCAGcCg- -3'
miRNA:   3'- aCCuGGUCCACGAGucaUCGUCuGag -5'
28733 3' -55.4 NC_006146.1 + 145391 0.68 0.853565
Target:  5'- aGcGCCAGGUGCUCuugggguagggguuGUAGCGGAaggCa -3'
miRNA:   3'- aCcUGGUCCACGAGu-------------CAUCGUCUga-G- -5'
28733 3' -55.4 NC_006146.1 + 166334 0.68 0.842286
Target:  5'- aGGcCCGGGUGCUCGGUgaauAGCuGGg-- -3'
miRNA:   3'- aCCuGGUCCACGAGUCA----UCGuCUgag -5'
28733 3' -55.4 NC_006146.1 + 43519 0.68 0.833995
Target:  5'- cGGGCCAGGcUGCcggccaccaUCAGUGG-GGugUCc -3'
miRNA:   3'- aCCUGGUCC-ACG---------AGUCAUCgUCugAG- -5'
28733 3' -55.4 NC_006146.1 + 148744 0.68 0.825517
Target:  5'- gGGGCCAGG-GCcucCAGaGGCAccaGGCUCa -3'
miRNA:   3'- aCCUGGUCCaCGa--GUCaUCGU---CUGAG- -5'
28733 3' -55.4 NC_006146.1 + 145667 0.68 0.825517
Target:  5'- gGGGCCAGG-GCcucCAGaGGCAccaGGCUCa -3'
miRNA:   3'- aCCUGGUCCaCGa--GUCaUCGU---CUGAG- -5'
28733 3' -55.4 NC_006146.1 + 142589 0.68 0.825517
Target:  5'- gGGGCCAGG-GCcucCAGaGGCAccaGGCUCa -3'
miRNA:   3'- aCCUGGUCCaCGa--GUCaUCGU---CUGAG- -5'
28733 3' -55.4 NC_006146.1 + 151822 0.68 0.825517
Target:  5'- gGGGCCAGG-GCcucCAGaGGCAccaGGCUCa -3'
miRNA:   3'- aCCUGGUCCaCGa--GUCaUCGU---CUGAG- -5'
28733 3' -55.4 NC_006146.1 + 154900 0.68 0.825517
Target:  5'- gGGGCCAGG-GCcucCAGaGGCAccaGGCUCa -3'
miRNA:   3'- aCCUGGUCCaCGa--GUCaUCGU---CUGAG- -5'
28733 3' -55.4 NC_006146.1 + 157978 0.68 0.825517
Target:  5'- gGGGCCAGG-GCcucCAGaGGCAccaGGCUCa -3'
miRNA:   3'- aCCUGGUCCaCGa--GUCaUCGU---CUGAG- -5'
28733 3' -55.4 NC_006146.1 + 4670 0.68 0.816858
Target:  5'- cUGGGCCGGGUggGCgaggCGGgGGCAGAUc- -3'
miRNA:   3'- -ACCUGGUCCA--CGa---GUCaUCGUCUGag -5'
28733 3' -55.4 NC_006146.1 + 164275 0.69 0.799035
Target:  5'- aGGucCCGGGUGUUCAcUAGCucAGugUCa -3'
miRNA:   3'- aCCu-GGUCCACGAGUcAUCG--UCugAG- -5'
28733 3' -55.4 NC_006146.1 + 65838 0.69 0.799035
Target:  5'- aUGGGCCAguGGUGaugUGGUgccgucccAGCGGACUCa -3'
miRNA:   3'- -ACCUGGU--CCACga-GUCA--------UCGUCUGAG- -5'
28733 3' -55.4 NC_006146.1 + 103580 0.69 0.789887
Target:  5'- cGGGCCuGGgccggGCUCAGc-GCGGACg- -3'
miRNA:   3'- aCCUGGuCCa----CGAGUCauCGUCUGag -5'
28733 3' -55.4 NC_006146.1 + 127089 0.69 0.789887
Target:  5'- aGGGCCAGG-GCggagCGGUGGgaCAGGCa- -3'
miRNA:   3'- aCCUGGUCCaCGa---GUCAUC--GUCUGag -5'
28733 3' -55.4 NC_006146.1 + 59251 0.7 0.751937
Target:  5'- aUGGGCCuGGGUGUUCAGggccUGGCcGACg- -3'
miRNA:   3'- -ACCUGG-UCCACGAGUC----AUCGuCUGag -5'
28733 3' -55.4 NC_006146.1 + 51447 0.7 0.751937
Target:  5'- gGGACCAcgcGGcagaacUGCUC-GUAGCAGcGCUCg -3'
miRNA:   3'- aCCUGGU---CC------ACGAGuCAUCGUC-UGAG- -5'
28733 3' -55.4 NC_006146.1 + 8437 0.7 0.712262
Target:  5'- gGGACCAGGagaGCUCGGgGGCGaGCUg -3'
miRNA:   3'- aCCUGGUCCa--CGAGUCaUCGUcUGAg -5'
28733 3' -55.4 NC_006146.1 + 148888 0.71 0.691968
Target:  5'- gGGACCGGGUGUUgggaccUGGUGGCGcccgccGGCUCc -3'
miRNA:   3'- aCCUGGUCCACGA------GUCAUCGU------CUGAG- -5'
28733 3' -55.4 NC_006146.1 + 151966 0.71 0.691968
Target:  5'- gGGACCGGGUGUUgggaccUGGUGGCGcccgccGGCUCc -3'
miRNA:   3'- aCCUGGUCCACGA------GUCAUCGU------CUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.