Results 41 - 53 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28733 | 3' | -55.4 | NC_006146.1 | + | 166334 | 0.68 | 0.842286 |
Target: 5'- aGGcCCGGGUGCUCGGUgaauAGCuGGg-- -3' miRNA: 3'- aCCuGGUCCACGAGUCA----UCGuCUgag -5' |
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28733 | 3' | -55.4 | NC_006146.1 | + | 8437 | 0.7 | 0.712262 |
Target: 5'- gGGACCAGGagaGCUCGGgGGCGaGCUg -3' miRNA: 3'- aCCUGGUCCa--CGAGUCaUCGUcUGAg -5' |
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28733 | 3' | -55.4 | NC_006146.1 | + | 51447 | 0.7 | 0.751937 |
Target: 5'- gGGACCAcgcGGcagaacUGCUC-GUAGCAGcGCUCg -3' miRNA: 3'- aCCUGGU---CC------ACGAGuCAUCGUC-UGAG- -5' |
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28733 | 3' | -55.4 | NC_006146.1 | + | 103580 | 0.69 | 0.789887 |
Target: 5'- cGGGCCuGGgccggGCUCAGc-GCGGACg- -3' miRNA: 3'- aCCUGGuCCa----CGAGUCauCGUCUGag -5' |
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28733 | 3' | -55.4 | NC_006146.1 | + | 164275 | 0.69 | 0.799035 |
Target: 5'- aGGucCCGGGUGUUCAcUAGCucAGugUCa -3' miRNA: 3'- aCCu-GGUCCACGAGUcAUCG--UCugAG- -5' |
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28733 | 3' | -55.4 | NC_006146.1 | + | 142589 | 0.68 | 0.825517 |
Target: 5'- gGGGCCAGG-GCcucCAGaGGCAccaGGCUCa -3' miRNA: 3'- aCCUGGUCCaCGa--GUCaUCGU---CUGAG- -5' |
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28733 | 3' | -55.4 | NC_006146.1 | + | 145667 | 0.68 | 0.825517 |
Target: 5'- gGGGCCAGG-GCcucCAGaGGCAccaGGCUCa -3' miRNA: 3'- aCCUGGUCCaCGa--GUCaUCGU---CUGAG- -5' |
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28733 | 3' | -55.4 | NC_006146.1 | + | 148744 | 0.68 | 0.825517 |
Target: 5'- gGGGCCAGG-GCcucCAGaGGCAccaGGCUCa -3' miRNA: 3'- aCCUGGUCCaCGa--GUCaUCGU---CUGAG- -5' |
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28733 | 3' | -55.4 | NC_006146.1 | + | 151822 | 0.68 | 0.825517 |
Target: 5'- gGGGCCAGG-GCcucCAGaGGCAccaGGCUCa -3' miRNA: 3'- aCCUGGUCCaCGa--GUCaUCGU---CUGAG- -5' |
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28733 | 3' | -55.4 | NC_006146.1 | + | 154900 | 0.68 | 0.825517 |
Target: 5'- gGGGCCAGG-GCcucCAGaGGCAccaGGCUCa -3' miRNA: 3'- aCCUGGUCCaCGa--GUCaUCGU---CUGAG- -5' |
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28733 | 3' | -55.4 | NC_006146.1 | + | 157978 | 0.68 | 0.825517 |
Target: 5'- gGGGCCAGG-GCcucCAGaGGCAccaGGCUCa -3' miRNA: 3'- aCCUGGUCCaCGa--GUCaUCGU---CUGAG- -5' |
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28733 | 3' | -55.4 | NC_006146.1 | + | 43519 | 0.68 | 0.833995 |
Target: 5'- cGGGCCAGGcUGCcggccaccaUCAGUGG-GGugUCc -3' miRNA: 3'- aCCUGGUCC-ACG---------AGUCAUCgUCugAG- -5' |
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28733 | 3' | -55.4 | NC_006146.1 | + | 57822 | 0.66 | 0.930227 |
Target: 5'- cGaGGCCGGGUGCUCcaaccuccaGGCAGAgaCa -3' miRNA: 3'- aC-CUGGUCCACGAGuca------UCGUCUgaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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