miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28733 5' -56.1 NC_006146.1 + 5406 0.66 0.929847
Target:  5'- cCGGGGCugCGUC-CU--GCCcUGCUGg -3'
miRNA:   3'- -GCCUUGugGCAGaGAcuCGGcACGAC- -5'
28733 5' -56.1 NC_006146.1 + 4919 0.66 0.924597
Target:  5'- cCGGAcccuCGCUGUCggguGGCCGUGCUc -3'
miRNA:   3'- -GCCUu---GUGGCAGagacUCGGCACGAc -5'
28733 5' -56.1 NC_006146.1 + 47633 0.66 0.924597
Target:  5'- aGGGccACgaGCCGUCUCUG-GCCGcgGCc- -3'
miRNA:   3'- gCCU--UG--UGGCAGAGACuCGGCa-CGac -5'
28733 5' -56.1 NC_006146.1 + 53711 0.67 0.894858
Target:  5'- gGGGGCAcguuccCCGUcCUCUccggGAGCCGcgGCUGc -3'
miRNA:   3'- gCCUUGU------GGCA-GAGA----CUCGGCa-CGAC- -5'
28733 5' -56.1 NC_006146.1 + 40130 0.67 0.8743
Target:  5'- uGGGACACCGUCUggagggGGGCUG-GCc- -3'
miRNA:   3'- gCCUUGUGGCAGAga----CUCGGCaCGac -5'
28733 5' -56.1 NC_006146.1 + 68793 0.69 0.792928
Target:  5'- uGGAACACCaugaucUCUCUG-GCCGUGa-- -3'
miRNA:   3'- gCCUUGUGGc-----AGAGACuCGGCACgac -5'
28733 5' -56.1 NC_006146.1 + 166186 1.08 0.004105
Target:  5'- gCGGAACACCGUCUCUGAGCCGUGCUGc -3'
miRNA:   3'- -GCCUUGUGGCAGAGACUCGGCACGAC- -5'
28733 5' -56.1 NC_006146.1 + 25050 0.74 0.536812
Target:  5'- uCGGAccaggACAUCGUC-CUGAGC-GUGCUGa -3'
miRNA:   3'- -GCCU-----UGUGGCAGaGACUCGgCACGAC- -5'
28733 5' -56.1 NC_006146.1 + 30278 0.71 0.697499
Target:  5'- aGGAGCGCCGUggucccCUcCUGGGCUucgcugGUGCUGc -3'
miRNA:   3'- gCCUUGUGGCA------GA-GACUCGG------CACGAC- -5'
28733 5' -56.1 NC_006146.1 + 76859 0.69 0.792928
Target:  5'- aGGGAUACgCGgcggcgCUCgGGGCCGUGCc- -3'
miRNA:   3'- gCCUUGUG-GCa-----GAGaCUCGGCACGac -5'
28733 5' -56.1 NC_006146.1 + 47181 0.66 0.907446
Target:  5'- aGGGugGCUGUCgg-GAGCCcgaGCUGg -3'
miRNA:   3'- gCCUugUGGCAGagaCUCGGca-CGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.