Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28734 | 3' | -44.3 | NC_006146.1 | + | 163255 | 1.12 | 0.026201 |
Target: 5'- aAUUUAGUUGGGUAGCAUAUGCUAUCCu -3' miRNA: 3'- -UAAAUCAACCCAUCGUAUACGAUAGG- -5' |
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28734 | 3' | -44.3 | NC_006146.1 | + | 163283 | 1.11 | 0.029554 |
Target: 5'- aAUUUAGUUGGGUAGCAUAUGCUAUCCc -3' miRNA: 3'- -UAAAUCAACCCAUCGUAUACGAUAGG- -5' |
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28734 | 3' | -44.3 | NC_006146.1 | + | 162807 | 0.97 | 0.190862 |
Target: 5'- ---aAGUUcGGGUAGCAUAUGCUAUCCa -3' miRNA: 3'- uaaaUCAA-CCCAUCGUAUACGAUAGG- -5' |
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28734 | 3' | -44.3 | NC_006146.1 | + | 163069 | 0.96 | 0.207136 |
Target: 5'- --aUAGcugUGGGUAGCAUAUGCUAUCCu -3' miRNA: 3'- uaaAUCa--ACCCAUCGUAUACGAUAGG- -5' |
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28734 | 3' | -44.3 | NC_006146.1 | + | 162991 | 0.94 | 0.277301 |
Target: 5'- --aUAGaucUGGGUAGCAUAUGCUAUCCu -3' miRNA: 3'- uaaAUCa--ACCCAUCGUAUACGAUAGG- -5' |
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28734 | 3' | -44.3 | NC_006146.1 | + | 162835 | 0.93 | 0.30716 |
Target: 5'- --aUAGUUaGGUAGCAUAUGCUAUCCu -3' miRNA: 3'- uaaAUCAAcCCAUCGUAUACGAUAGG- -5' |
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28734 | 3' | -44.3 | NC_006146.1 | + | 162909 | 0.91 | 0.356443 |
Target: 5'- --cUAGUacagcUGGGUAGUAUAUGCUGUCCu -3' miRNA: 3'- uaaAUCA-----ACCCAUCGUAUACGAUAGG- -5' |
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28734 | 3' | -44.3 | NC_006146.1 | + | 162940 | 0.9 | 0.392259 |
Target: 5'- ---aAGUUGGGaUAGCAUAUGCUAUCUu -3' miRNA: 3'- uaaaUCAACCC-AUCGUAUACGAUAGG- -5' |
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28734 | 3' | -44.3 | NC_006146.1 | + | 163096 | 0.9 | 0.392259 |
Target: 5'- aAUUUAGUUGGGUAGUGUAUaCUAUCCu -3' miRNA: 3'- -UAAAUCAACCCAUCGUAUAcGAUAGG- -5' |
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28734 | 3' | -44.3 | NC_006146.1 | + | 163149 | 0.9 | 0.392259 |
Target: 5'- aAUUUAGUUGGGUAGUGUAUaCUAUCCu -3' miRNA: 3'- -UAAAUCAACCCAUCGUAUAcGAUAGG- -5' |
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28734 | 3' | -44.3 | NC_006146.1 | + | 163202 | 0.9 | 0.392259 |
Target: 5'- aAUUUAGUUGGGUAGUGUAUaCUAUCCu -3' miRNA: 3'- -UAAAUCAACCCAUCGUAUAcGAUAGG- -5' |
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28734 | 3' | -44.3 | NC_006146.1 | + | 163337 | 0.9 | 0.401572 |
Target: 5'- --cUAGcuUUGGGUAGCAUAUGUUAUCCu -3' miRNA: 3'- uaaAUC--AACCCAUCGUAUACGAUAGG- -5' |
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28734 | 3' | -44.3 | NC_006146.1 | + | 163368 | 0.87 | 0.555925 |
Target: 5'- ----uGUUaGGGUAGUAUAUGCUAUCCu -3' miRNA: 3'- uaaauCAA-CCCAUCGUAUACGAUAGG- -5' |
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28734 | 3' | -44.3 | NC_006146.1 | + | 8146 | 0.84 | 0.689958 |
Target: 5'- ----uGUU-GGUAGCGUAUGCUAUCCa -3' miRNA: 3'- uaaauCAAcCCAUCGUAUACGAUAGG- -5' |
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28734 | 3' | -44.3 | NC_006146.1 | + | 163228 | 0.81 | 0.824784 |
Target: 5'- --cUAGcuuucGGUAGCAUAUGCUAUCCu -3' miRNA: 3'- uaaAUCaac--CCAUCGUAUACGAUAGG- -5' |
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28734 | 3' | -44.3 | NC_006146.1 | + | 9725 | 0.81 | 0.851747 |
Target: 5'- -cUUGGUcaucuucugGGGUAGUAUAUGCUAUCa -3' miRNA: 3'- uaAAUCAa--------CCCAUCGUAUACGAUAGg -5' |
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28734 | 3' | -44.3 | NC_006146.1 | + | 163043 | 0.8 | 0.860267 |
Target: 5'- aAUUUAGUUGGGUAGUGUAUaCUAUCn -3' miRNA: 3'- -UAAAUCAACCCAUCGUAUAcGAUAGg -5' |
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28734 | 3' | -44.3 | NC_006146.1 | + | 163016 | 0.8 | 0.876556 |
Target: 5'- --cUAGcuUUGcGUAGCAUAUGCUAUCCu -3' miRNA: 3'- uaaAUC--AACcCAUCGUAUACGAUAGG- -5' |
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28734 | 3' | -44.3 | NC_006146.1 | + | 7779 | 0.79 | 0.891793 |
Target: 5'- -------aGGGUAGCAUAUGCUA-CCg -3' miRNA: 3'- uaaaucaaCCCAUCGUAUACGAUaGG- -5' |
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28734 | 3' | -44.3 | NC_006146.1 | + | 162891 | 0.79 | 0.899003 |
Target: 5'- -------gGGGUAGCAUAUGCUAUCn -3' miRNA: 3'- uaaaucaaCCCAUCGUAUACGAUAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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