Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28734 | 3' | -44.3 | NC_006146.1 | + | 8146 | 0.84 | 0.689958 |
Target: 5'- ----uGUU-GGUAGCGUAUGCUAUCCa -3' miRNA: 3'- uaaauCAAcCCAUCGUAUACGAUAGG- -5' |
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28734 | 3' | -44.3 | NC_006146.1 | + | 69677 | 0.67 | 0.999995 |
Target: 5'- ----uGggGGGUGGCAUAUcugaagGCUG-CCa -3' miRNA: 3'- uaaauCaaCCCAUCGUAUA------CGAUaGG- -5' |
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28734 | 3' | -44.3 | NC_006146.1 | + | 8094 | 0.68 | 0.999964 |
Target: 5'- ------cUGGaUAGCAUAUGCUAcCCg -3' miRNA: 3'- uaaaucaACCcAUCGUAUACGAUaGG- -5' |
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28734 | 3' | -44.3 | NC_006146.1 | + | 8117 | 0.69 | 0.999934 |
Target: 5'- -cUUAucUGGaUAGCAUcUGCUAUCCu -3' miRNA: 3'- uaAAUcaACCcAUCGUAuACGAUAGG- -5' |
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28734 | 3' | -44.3 | NC_006146.1 | + | 9310 | 0.72 | 0.998127 |
Target: 5'- ---cGGccGGGcAGCAUuUGCUAUCCg -3' miRNA: 3'- uaaaUCaaCCCaUCGUAuACGAUAGG- -5' |
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28734 | 3' | -44.3 | NC_006146.1 | + | 7614 | 0.76 | 0.966957 |
Target: 5'- -----aUUGGGaUAGCAUAUGCUAcCCa -3' miRNA: 3'- uaaaucAACCC-AUCGUAUACGAUaGG- -5' |
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28734 | 3' | -44.3 | NC_006146.1 | + | 7910 | 0.66 | 0.999999 |
Target: 5'- -------aGGaUAGCAUAUGCUAcCCa -3' miRNA: 3'- uaaaucaaCCcAUCGUAUACGAUaGG- -5' |
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28734 | 3' | -44.3 | NC_006146.1 | + | 154344 | 0.67 | 0.999997 |
Target: 5'- ----cGUUGuGGcacUGGUAgAUGCUGUCCa -3' miRNA: 3'- uaaauCAAC-CC---AUCGUaUACGAUAGG- -5' |
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28734 | 3' | -44.3 | NC_006146.1 | + | 139105 | 0.67 | 0.999987 |
Target: 5'- ---gAGUUGGGUuGCGUggGgUGUCa -3' miRNA: 3'- uaaaUCAACCCAuCGUAuaCgAUAGg -5' |
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28734 | 3' | -44.3 | NC_006146.1 | + | 43977 | 0.71 | 0.998739 |
Target: 5'- ----uGgcGGGUAaUAUAUGCUAUCCu -3' miRNA: 3'- uaaauCaaCCCAUcGUAUACGAUAGG- -5' |
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28734 | 3' | -44.3 | NC_006146.1 | + | 9725 | 0.81 | 0.851747 |
Target: 5'- -cUUGGUcaucuucugGGGUAGUAUAUGCUAUCa -3' miRNA: 3'- uaAAUCAa--------CCCAUCGUAUACGAUAGg -5' |
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28734 | 3' | -44.3 | NC_006146.1 | + | 7645 | 0.66 | 0.999999 |
Target: 5'- -------aGGaUAGCAUAUGCUAcCCa -3' miRNA: 3'- uaaaucaaCCcAUCGUAUACGAUaGG- -5' |
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28734 | 3' | -44.3 | NC_006146.1 | + | 7779 | 0.79 | 0.891793 |
Target: 5'- -------aGGGUAGCAUAUGCUA-CCg -3' miRNA: 3'- uaaaucaaCCCAUCGUAUACGAUaGG- -5' |
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28734 | 3' | -44.3 | NC_006146.1 | + | 152895 | 0.68 | 0.999964 |
Target: 5'- -------aGGGUGGCG-AUGCcGUCCa -3' miRNA: 3'- uaaaucaaCCCAUCGUaUACGaUAGG- -5' |
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28734 | 3' | -44.3 | NC_006146.1 | + | 7832 | 0.66 | 0.999999 |
Target: 5'- -------aGGaUAGCAUAUGCUAcCCa -3' miRNA: 3'- uaaaucaaCCcAUCGUAUACGAUaGG- -5' |
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28734 | 3' | -44.3 | NC_006146.1 | + | 7500 | 0.77 | 0.955463 |
Target: 5'- --aUAGUaGGaUAGCAUAUGCUAUCa -3' miRNA: 3'- uaaAUCAaCCcAUCGUAUACGAUAGg -5' |
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28734 | 3' | -44.3 | NC_006146.1 | + | 7966 | 0.67 | 0.999997 |
Target: 5'- ----------aUAGCAUAUGCUAUCCc -3' miRNA: 3'- uaaaucaacccAUCGUAUACGAUAGG- -5' |
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28734 | 3' | -44.3 | NC_006146.1 | + | 163337 | 0.9 | 0.401572 |
Target: 5'- --cUAGcuUUGGGUAGCAUAUGUUAUCCu -3' miRNA: 3'- uaaAUC--AACCCAUCGUAUACGAUAGG- -5' |
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28734 | 3' | -44.3 | NC_006146.1 | + | 163368 | 0.87 | 0.555925 |
Target: 5'- ----uGUUaGGGUAGUAUAUGCUAUCCu -3' miRNA: 3'- uaaauCAA-CCCAUCGUAUACGAUAGG- -5' |
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28734 | 3' | -44.3 | NC_006146.1 | + | 163228 | 0.81 | 0.824784 |
Target: 5'- --cUAGcuuucGGUAGCAUAUGCUAUCCu -3' miRNA: 3'- uaaAUCaac--CCAUCGUAUACGAUAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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