miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28734 3' -44.3 NC_006146.1 + 7614 0.76 0.966957
Target:  5'- -----aUUGGGaUAGCAUAUGCUAcCCa -3'
miRNA:   3'- uaaaucAACCC-AUCGUAUACGAUaGG- -5'
28734 3' -44.3 NC_006146.1 + 7500 0.77 0.955463
Target:  5'- --aUAGUaGGaUAGCAUAUGCUAUCa -3'
miRNA:   3'- uaaAUCAaCCcAUCGUAUACGAUAGg -5'
28734 3' -44.3 NC_006146.1 + 161568 0.78 0.92502
Target:  5'- --cUAGUUGGGUAGUAUGUaCUAcCCg -3'
miRNA:   3'- uaaAUCAACCCAUCGUAUAcGAUaGG- -5'
28734 3' -44.3 NC_006146.1 + 162891 0.79 0.899003
Target:  5'- -------gGGGUAGCAUAUGCUAUCn -3'
miRNA:   3'- uaaaucaaCCCAUCGUAUACGAUAGg -5'
28734 3' -44.3 NC_006146.1 + 7779 0.79 0.891793
Target:  5'- -------aGGGUAGCAUAUGCUA-CCg -3'
miRNA:   3'- uaaaucaaCCCAUCGUAUACGAUaGG- -5'
28734 3' -44.3 NC_006146.1 + 163016 0.8 0.876556
Target:  5'- --cUAGcuUUGcGUAGCAUAUGCUAUCCu -3'
miRNA:   3'- uaaAUC--AACcCAUCGUAUACGAUAGG- -5'
28734 3' -44.3 NC_006146.1 + 163043 0.8 0.860267
Target:  5'- aAUUUAGUUGGGUAGUGUAUaCUAUCn -3'
miRNA:   3'- -UAAAUCAACCCAUCGUAUAcGAUAGg -5'
28734 3' -44.3 NC_006146.1 + 9725 0.81 0.851747
Target:  5'- -cUUGGUcaucuucugGGGUAGUAUAUGCUAUCa -3'
miRNA:   3'- uaAAUCAa--------CCCAUCGUAUACGAUAGg -5'
28734 3' -44.3 NC_006146.1 + 163228 0.81 0.824784
Target:  5'- --cUAGcuuucGGUAGCAUAUGCUAUCCu -3'
miRNA:   3'- uaaAUCaac--CCAUCGUAUACGAUAGG- -5'
28734 3' -44.3 NC_006146.1 + 8146 0.84 0.689958
Target:  5'- ----uGUU-GGUAGCGUAUGCUAUCCa -3'
miRNA:   3'- uaaauCAAcCCAUCGUAUACGAUAGG- -5'
28734 3' -44.3 NC_006146.1 + 163368 0.87 0.555925
Target:  5'- ----uGUUaGGGUAGUAUAUGCUAUCCu -3'
miRNA:   3'- uaaauCAA-CCCAUCGUAUACGAUAGG- -5'
28734 3' -44.3 NC_006146.1 + 163337 0.9 0.401572
Target:  5'- --cUAGcuUUGGGUAGCAUAUGUUAUCCu -3'
miRNA:   3'- uaaAUC--AACCCAUCGUAUACGAUAGG- -5'
28734 3' -44.3 NC_006146.1 + 163202 0.9 0.392259
Target:  5'- aAUUUAGUUGGGUAGUGUAUaCUAUCCu -3'
miRNA:   3'- -UAAAUCAACCCAUCGUAUAcGAUAGG- -5'
28734 3' -44.3 NC_006146.1 + 162940 0.9 0.392259
Target:  5'- ---aAGUUGGGaUAGCAUAUGCUAUCUu -3'
miRNA:   3'- uaaaUCAACCC-AUCGUAUACGAUAGG- -5'
28734 3' -44.3 NC_006146.1 + 163096 0.9 0.392259
Target:  5'- aAUUUAGUUGGGUAGUGUAUaCUAUCCu -3'
miRNA:   3'- -UAAAUCAACCCAUCGUAUAcGAUAGG- -5'
28734 3' -44.3 NC_006146.1 + 163149 0.9 0.392259
Target:  5'- aAUUUAGUUGGGUAGUGUAUaCUAUCCu -3'
miRNA:   3'- -UAAAUCAACCCAUCGUAUAcGAUAGG- -5'
28734 3' -44.3 NC_006146.1 + 162909 0.91 0.356443
Target:  5'- --cUAGUacagcUGGGUAGUAUAUGCUGUCCu -3'
miRNA:   3'- uaaAUCA-----ACCCAUCGUAUACGAUAGG- -5'
28734 3' -44.3 NC_006146.1 + 162835 0.93 0.30716
Target:  5'- --aUAGUUaGGUAGCAUAUGCUAUCCu -3'
miRNA:   3'- uaaAUCAAcCCAUCGUAUACGAUAGG- -5'
28734 3' -44.3 NC_006146.1 + 162991 0.94 0.277301
Target:  5'- --aUAGaucUGGGUAGCAUAUGCUAUCCu -3'
miRNA:   3'- uaaAUCa--ACCCAUCGUAUACGAUAGG- -5'
28734 3' -44.3 NC_006146.1 + 163069 0.96 0.207136
Target:  5'- --aUAGcugUGGGUAGCAUAUGCUAUCCu -3'
miRNA:   3'- uaaAUCa--ACCCAUCGUAUACGAUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.