Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28734 | 5' | -47.8 | NC_006146.1 | + | 163289 | 1.04 | 0.027209 |
Target: 5'- gUUGGGUAGCAUAUGCUAUCCCAAUUUa -3' miRNA: 3'- -AACCCAUCGUAUACGAUAGGGUUAAA- -5' |
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28734 | 5' | -47.8 | NC_006146.1 | + | 163261 | 0.99 | 0.05393 |
Target: 5'- gUUGGGUAGCAUAUGCUAUCCUAAUUUa -3' miRNA: 3'- -AACCCAUCGUAUACGAUAGGGUUAAA- -5' |
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28734 | 5' | -47.8 | NC_006146.1 | + | 163075 | 0.99 | 0.055544 |
Target: 5'- gUGGGUAGCAUAUGCUAUCCUAAUUUa -3' miRNA: 3'- aACCCAUCGUAUACGAUAGGGUUAAA- -5' |
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28734 | 5' | -47.8 | NC_006146.1 | + | 162891 | 0.93 | 0.128712 |
Target: 5'- -gGGGUAGCAUAUGCUAUCCUAGUa- -3' miRNA: 3'- aaCCCAUCGUAUACGAUAGGGUUAaa -5' |
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28734 | 5' | -47.8 | NC_006146.1 | + | 162997 | 0.92 | 0.140079 |
Target: 5'- cUGGGUAGCAUAUGCUAUCCUAGc-- -3' miRNA: 3'- aACCCAUCGUAUACGAUAGGGUUaaa -5' |
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28734 | 5' | -47.8 | NC_006146.1 | + | 162918 | 0.89 | 0.206105 |
Target: 5'- cUGGGUAGUAUAUGCUGUCCUAAa-- -3' miRNA: 3'- aACCCAUCGUAUACGAUAGGGUUaaa -5' |
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28734 | 5' | -47.8 | NC_006146.1 | + | 163372 | 0.89 | 0.211731 |
Target: 5'- -aGGGUAGUAUAUGCUAUCCUAGUg- -3' miRNA: 3'- aaCCCAUCGUAUACGAUAGGGUUAaa -5' |
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28734 | 5' | -47.8 | NC_006146.1 | + | 163342 | 0.89 | 0.211731 |
Target: 5'- uUUGGGUAGCAUAUGUUAUCCUGAUa- -3' miRNA: 3'- -AACCCAUCGUAUACGAUAGGGUUAaa -5' |
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28734 | 5' | -47.8 | NC_006146.1 | + | 163236 | 0.88 | 0.248309 |
Target: 5'- --cGGUAGCAUAUGCUAUCCUAAUUUa -3' miRNA: 3'- aacCCAUCGUAUACGAUAGGGUUAAA- -5' |
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28734 | 5' | -47.8 | NC_006146.1 | + | 162812 | 0.86 | 0.328701 |
Target: 5'- -cGGGUAGCAUAUGCUAUCCaGAUa- -3' miRNA: 3'- aaCCCAUCGUAUACGAUAGGgUUAaa -5' |
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28734 | 5' | -47.8 | NC_006146.1 | + | 162841 | 0.85 | 0.371137 |
Target: 5'- --aGGUAGCAUAUGCUAUCCUAAUa- -3' miRNA: 3'- aacCCAUCGUAUACGAUAGGGUUAaa -5' |
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28734 | 5' | -47.8 | NC_006146.1 | + | 163021 | 0.85 | 0.371137 |
Target: 5'- uUUGcGUAGCAUAUGCUAUCCUAAUUUa -3' miRNA: 3'- -AACcCAUCGUAUACGAUAGGGUUAAA- -5' |
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28734 | 5' | -47.8 | NC_006146.1 | + | 162942 | 0.82 | 0.476728 |
Target: 5'- gUUGGGaUAGCAUAUGCUAUCUUAAUa- -3' miRNA: 3'- -AACCC-AUCGUAUACGAUAGGGUUAaa -5' |
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28734 | 5' | -47.8 | NC_006146.1 | + | 7966 | 0.81 | 0.562035 |
Target: 5'- ----aUAGCAUAUGCUAUCCCAAUUUa -3' miRNA: 3'- aacccAUCGUAUACGAUAGGGUUAAA- -5' |
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28734 | 5' | -47.8 | NC_006146.1 | + | 162970 | 0.8 | 0.606302 |
Target: 5'- -cGGGUAGCAUAUaCUAUCCUAAUa- -3' miRNA: 3'- aaCCCAUCGUAUAcGAUAGGGUUAaa -5' |
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28734 | 5' | -47.8 | NC_006146.1 | + | 7614 | 0.8 | 0.606302 |
Target: 5'- aUUGGGaUAGCAUAUGCUA-CCCAAc-- -3' miRNA: 3'- -AACCC-AUCGUAUACGAUaGGGUUaaa -5' |
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28734 | 5' | -47.8 | NC_006146.1 | + | 163183 | 0.79 | 0.639773 |
Target: 5'- --cGGUAGCAUAUGCUuUCCUAAUUUa -3' miRNA: 3'- aacCCAUCGUAUACGAuAGGGUUAAA- -5' |
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28734 | 5' | -47.8 | NC_006146.1 | + | 163130 | 0.78 | 0.684247 |
Target: 5'- --cGGUAGCAUAUGCUAcCCUAAUUUa -3' miRNA: 3'- aacCCAUCGUAUACGAUaGGGUUAAA- -5' |
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28734 | 5' | -47.8 | NC_006146.1 | + | 9739 | 0.78 | 0.684247 |
Target: 5'- -gGGGUAGUAUAUGCUAUcaCCCGGg-- -3' miRNA: 3'- aaCCCAUCGUAUACGAUA--GGGUUaaa -5' |
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28734 | 5' | -47.8 | NC_006146.1 | + | 7779 | 0.76 | 0.790182 |
Target: 5'- -aGGGUAGCAUAUGCUA-CCgAAa-- -3' miRNA: 3'- aaCCCAUCGUAUACGAUaGGgUUaaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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