Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28734 | 5' | -47.8 | NC_006146.1 | + | 7505 | 0.66 | 0.999351 |
Target: 5'- -aGGaUAGCAUAUGCUAUCaaaaGGUUa -3' miRNA: 3'- aaCCcAUCGUAUACGAUAGgg--UUAAa -5' |
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28734 | 5' | -47.8 | NC_006146.1 | + | 7614 | 0.8 | 0.606302 |
Target: 5'- aUUGGGaUAGCAUAUGCUA-CCCAAc-- -3' miRNA: 3'- -AACCC-AUCGUAUACGAUaGGGUUaaa -5' |
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28734 | 5' | -47.8 | NC_006146.1 | + | 7645 | 0.71 | 0.964368 |
Target: 5'- -aGGaUAGCAUAUGCUA-CCCAAc-- -3' miRNA: 3'- aaCCcAUCGUAUACGAUaGGGUUaaa -5' |
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28734 | 5' | -47.8 | NC_006146.1 | + | 7779 | 0.76 | 0.790182 |
Target: 5'- -aGGGUAGCAUAUGCUA-CCgAAa-- -3' miRNA: 3'- aaCCCAUCGUAUACGAUaGGgUUaaa -5' |
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28734 | 5' | -47.8 | NC_006146.1 | + | 7832 | 0.69 | 0.989075 |
Target: 5'- -aGGaUAGCAUAUGCUA-CCCAc--- -3' miRNA: 3'- aaCCcAUCGUAUACGAUaGGGUuaaa -5' |
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28734 | 5' | -47.8 | NC_006146.1 | + | 7910 | 0.71 | 0.964368 |
Target: 5'- -aGGaUAGCAUAUGCUA-CCCAGa-- -3' miRNA: 3'- aaCCcAUCGUAUACGAUaGGGUUaaa -5' |
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28734 | 5' | -47.8 | NC_006146.1 | + | 7966 | 0.81 | 0.562035 |
Target: 5'- ----aUAGCAUAUGCUAUCCCAAUUUa -3' miRNA: 3'- aacccAUCGUAUACGAUAGGGUUAAA- -5' |
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28734 | 5' | -47.8 | NC_006146.1 | + | 8016 | 0.75 | 0.85501 |
Target: 5'- -aGGaUAGCAUAUGCUAcCCCAAUa- -3' miRNA: 3'- aaCCcAUCGUAUACGAUaGGGUUAaa -5' |
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28734 | 5' | -47.8 | NC_006146.1 | + | 8067 | 0.66 | 0.998771 |
Target: 5'- -aGGaUAGCAUAUGCUA-CCUAAc-- -3' miRNA: 3'- aaCCcAUCGUAUACGAUaGGGUUaaa -5' |
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28734 | 5' | -47.8 | NC_006146.1 | + | 8094 | 0.73 | 0.908199 |
Target: 5'- cUGGaUAGCAUAUGCUA-CCCGAa-- -3' miRNA: 3'- aACCcAUCGUAUACGAUaGGGUUaaa -5' |
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28734 | 5' | -47.8 | NC_006146.1 | + | 8122 | 0.75 | 0.837548 |
Target: 5'- cUGGaUAGCAUcUGCUAUCCUAAUUg -3' miRNA: 3'- aACCcAUCGUAuACGAUAGGGUUAAa -5' |
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28734 | 5' | -47.8 | NC_006146.1 | + | 8149 | 0.74 | 0.879384 |
Target: 5'- --uGGUAGCGUAUGCUAUCCa----- -3' miRNA: 3'- aacCCAUCGUAUACGAUAGGguuaaa -5' |
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28734 | 5' | -47.8 | NC_006146.1 | + | 9314 | 0.66 | 0.999 |
Target: 5'- -cGGGcAGCAUuUGCUAUCCg----- -3' miRNA: 3'- aaCCCaUCGUAuACGAUAGGguuaaa -5' |
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28734 | 5' | -47.8 | NC_006146.1 | + | 9739 | 0.78 | 0.684247 |
Target: 5'- -gGGGUAGUAUAUGCUAUcaCCCGGg-- -3' miRNA: 3'- aaCCCAUCGUAUACGAUA--GGGUUaaa -5' |
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28734 | 5' | -47.8 | NC_006146.1 | + | 12285 | 0.66 | 0.999192 |
Target: 5'- cUGGGUGGgAUcagGCUAaCCCAAg-- -3' miRNA: 3'- aACCCAUCgUAua-CGAUaGGGUUaaa -5' |
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28734 | 5' | -47.8 | NC_006146.1 | + | 15364 | 0.66 | 0.999192 |
Target: 5'- cUGGGUGGgAUcagGCUAaCCCAAg-- -3' miRNA: 3'- aACCCAUCgUAua-CGAUaGGGUUaaa -5' |
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28734 | 5' | -47.8 | NC_006146.1 | + | 18442 | 0.66 | 0.999192 |
Target: 5'- cUGGGUGGgAUcagGCUAaCCCAAg-- -3' miRNA: 3'- aACCCAUCgUAua-CGAUaGGGUUaaa -5' |
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28734 | 5' | -47.8 | NC_006146.1 | + | 21520 | 0.66 | 0.999192 |
Target: 5'- cUGGGUGGgAUcagGCUAaCCCAAg-- -3' miRNA: 3'- aACCCAUCgUAua-CGAUaGGGUUaaa -5' |
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28734 | 5' | -47.8 | NC_006146.1 | + | 24598 | 0.66 | 0.999192 |
Target: 5'- cUGGGUGGgAUcagGCUAaCCCAAg-- -3' miRNA: 3'- aACCCAUCgUAua-CGAUaGGGUUaaa -5' |
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28734 | 5' | -47.8 | NC_006146.1 | + | 27676 | 0.66 | 0.999192 |
Target: 5'- cUGGGUGGgAUcagGCUAaCCCAAg-- -3' miRNA: 3'- aACCCAUCgUAua-CGAUaGGGUUaaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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