miRNA display CGI


Results 1 - 20 of 46 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28734 5' -47.8 NC_006146.1 + 7505 0.66 0.999351
Target:  5'- -aGGaUAGCAUAUGCUAUCaaaaGGUUa -3'
miRNA:   3'- aaCCcAUCGUAUACGAUAGgg--UUAAa -5'
28734 5' -47.8 NC_006146.1 + 7614 0.8 0.606302
Target:  5'- aUUGGGaUAGCAUAUGCUA-CCCAAc-- -3'
miRNA:   3'- -AACCC-AUCGUAUACGAUaGGGUUaaa -5'
28734 5' -47.8 NC_006146.1 + 7645 0.71 0.964368
Target:  5'- -aGGaUAGCAUAUGCUA-CCCAAc-- -3'
miRNA:   3'- aaCCcAUCGUAUACGAUaGGGUUaaa -5'
28734 5' -47.8 NC_006146.1 + 7779 0.76 0.790182
Target:  5'- -aGGGUAGCAUAUGCUA-CCgAAa-- -3'
miRNA:   3'- aaCCCAUCGUAUACGAUaGGgUUaaa -5'
28734 5' -47.8 NC_006146.1 + 7832 0.69 0.989075
Target:  5'- -aGGaUAGCAUAUGCUA-CCCAc--- -3'
miRNA:   3'- aaCCcAUCGUAUACGAUaGGGUuaaa -5'
28734 5' -47.8 NC_006146.1 + 7910 0.71 0.964368
Target:  5'- -aGGaUAGCAUAUGCUA-CCCAGa-- -3'
miRNA:   3'- aaCCcAUCGUAUACGAUaGGGUUaaa -5'
28734 5' -47.8 NC_006146.1 + 7966 0.81 0.562035
Target:  5'- ----aUAGCAUAUGCUAUCCCAAUUUa -3'
miRNA:   3'- aacccAUCGUAUACGAUAGGGUUAAA- -5'
28734 5' -47.8 NC_006146.1 + 8016 0.75 0.85501
Target:  5'- -aGGaUAGCAUAUGCUAcCCCAAUa- -3'
miRNA:   3'- aaCCcAUCGUAUACGAUaGGGUUAaa -5'
28734 5' -47.8 NC_006146.1 + 8067 0.66 0.998771
Target:  5'- -aGGaUAGCAUAUGCUA-CCUAAc-- -3'
miRNA:   3'- aaCCcAUCGUAUACGAUaGGGUUaaa -5'
28734 5' -47.8 NC_006146.1 + 8094 0.73 0.908199
Target:  5'- cUGGaUAGCAUAUGCUA-CCCGAa-- -3'
miRNA:   3'- aACCcAUCGUAUACGAUaGGGUUaaa -5'
28734 5' -47.8 NC_006146.1 + 8122 0.75 0.837548
Target:  5'- cUGGaUAGCAUcUGCUAUCCUAAUUg -3'
miRNA:   3'- aACCcAUCGUAuACGAUAGGGUUAAa -5'
28734 5' -47.8 NC_006146.1 + 8149 0.74 0.879384
Target:  5'- --uGGUAGCGUAUGCUAUCCa----- -3'
miRNA:   3'- aacCCAUCGUAUACGAUAGGguuaaa -5'
28734 5' -47.8 NC_006146.1 + 9314 0.66 0.999
Target:  5'- -cGGGcAGCAUuUGCUAUCCg----- -3'
miRNA:   3'- aaCCCaUCGUAuACGAUAGGguuaaa -5'
28734 5' -47.8 NC_006146.1 + 9739 0.78 0.684247
Target:  5'- -gGGGUAGUAUAUGCUAUcaCCCGGg-- -3'
miRNA:   3'- aaCCCAUCGUAUACGAUA--GGGUUaaa -5'
28734 5' -47.8 NC_006146.1 + 12285 0.66 0.999192
Target:  5'- cUGGGUGGgAUcagGCUAaCCCAAg-- -3'
miRNA:   3'- aACCCAUCgUAua-CGAUaGGGUUaaa -5'
28734 5' -47.8 NC_006146.1 + 15364 0.66 0.999192
Target:  5'- cUGGGUGGgAUcagGCUAaCCCAAg-- -3'
miRNA:   3'- aACCCAUCgUAua-CGAUaGGGUUaaa -5'
28734 5' -47.8 NC_006146.1 + 18442 0.66 0.999192
Target:  5'- cUGGGUGGgAUcagGCUAaCCCAAg-- -3'
miRNA:   3'- aACCCAUCgUAua-CGAUaGGGUUaaa -5'
28734 5' -47.8 NC_006146.1 + 21520 0.66 0.999192
Target:  5'- cUGGGUGGgAUcagGCUAaCCCAAg-- -3'
miRNA:   3'- aACCCAUCgUAua-CGAUaGGGUUaaa -5'
28734 5' -47.8 NC_006146.1 + 24598 0.66 0.999192
Target:  5'- cUGGGUGGgAUcagGCUAaCCCAAg-- -3'
miRNA:   3'- aACCCAUCgUAua-CGAUaGGGUUaaa -5'
28734 5' -47.8 NC_006146.1 + 27676 0.66 0.999192
Target:  5'- cUGGGUGGgAUcagGCUAaCCCAAg-- -3'
miRNA:   3'- aACCCAUCgUAua-CGAUaGGGUUaaa -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.