miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28734 5' -47.8 NC_006146.1 + 163208 0.73 0.926887
Target:  5'- gUUGGGUAGUGUAUaCUAUCCUAGc-- -3'
miRNA:   3'- -AACCCAUCGUAUAcGAUAGGGUUaaa -5'
28734 5' -47.8 NC_006146.1 + 163155 0.73 0.926887
Target:  5'- gUUGGGUAGUGUAUaCUAUCCUAGc-- -3'
miRNA:   3'- -AACCCAUCGUAUAcGAUAGGGUUaaa -5'
28734 5' -47.8 NC_006146.1 + 8094 0.73 0.908199
Target:  5'- cUGGaUAGCAUAUGCUA-CCCGAa-- -3'
miRNA:   3'- aACCcAUCGUAUACGAUaGGGUUaaa -5'
28734 5' -47.8 NC_006146.1 + 8149 0.74 0.879384
Target:  5'- --uGGUAGCGUAUGCUAUCCa----- -3'
miRNA:   3'- aacCCAUCGUAUACGAUAGGguuaaa -5'
28734 5' -47.8 NC_006146.1 + 8016 0.75 0.85501
Target:  5'- -aGGaUAGCAUAUGCUAcCCCAAUa- -3'
miRNA:   3'- aaCCcAUCGUAUACGAUaGGGUUAaa -5'
28734 5' -47.8 NC_006146.1 + 8122 0.75 0.837548
Target:  5'- cUGGaUAGCAUcUGCUAUCCUAAUUg -3'
miRNA:   3'- aACCcAUCGUAuACGAUAGGGUUAAa -5'
28734 5' -47.8 NC_006146.1 + 7779 0.76 0.790182
Target:  5'- -aGGGUAGCAUAUGCUA-CCgAAa-- -3'
miRNA:   3'- aaCCCAUCGUAUACGAUaGGgUUaaa -5'
28734 5' -47.8 NC_006146.1 + 9739 0.78 0.684247
Target:  5'- -gGGGUAGUAUAUGCUAUcaCCCGGg-- -3'
miRNA:   3'- aaCCCAUCGUAUACGAUA--GGGUUaaa -5'
28734 5' -47.8 NC_006146.1 + 163130 0.78 0.684247
Target:  5'- --cGGUAGCAUAUGCUAcCCUAAUUUa -3'
miRNA:   3'- aacCCAUCGUAUACGAUaGGGUUAAA- -5'
28734 5' -47.8 NC_006146.1 + 163183 0.79 0.639773
Target:  5'- --cGGUAGCAUAUGCUuUCCUAAUUUa -3'
miRNA:   3'- aacCCAUCGUAUACGAuAGGGUUAAA- -5'
28734 5' -47.8 NC_006146.1 + 7614 0.8 0.606302
Target:  5'- aUUGGGaUAGCAUAUGCUA-CCCAAc-- -3'
miRNA:   3'- -AACCC-AUCGUAUACGAUaGGGUUaaa -5'
28734 5' -47.8 NC_006146.1 + 162970 0.8 0.606302
Target:  5'- -cGGGUAGCAUAUaCUAUCCUAAUa- -3'
miRNA:   3'- aaCCCAUCGUAUAcGAUAGGGUUAaa -5'
28734 5' -47.8 NC_006146.1 + 7966 0.81 0.562035
Target:  5'- ----aUAGCAUAUGCUAUCCCAAUUUa -3'
miRNA:   3'- aacccAUCGUAUACGAUAGGGUUAAA- -5'
28734 5' -47.8 NC_006146.1 + 162942 0.82 0.476728
Target:  5'- gUUGGGaUAGCAUAUGCUAUCUUAAUa- -3'
miRNA:   3'- -AACCC-AUCGUAUACGAUAGGGUUAaa -5'
28734 5' -47.8 NC_006146.1 + 163021 0.85 0.371137
Target:  5'- uUUGcGUAGCAUAUGCUAUCCUAAUUUa -3'
miRNA:   3'- -AACcCAUCGUAUACGAUAGGGUUAAA- -5'
28734 5' -47.8 NC_006146.1 + 162841 0.85 0.371137
Target:  5'- --aGGUAGCAUAUGCUAUCCUAAUa- -3'
miRNA:   3'- aacCCAUCGUAUACGAUAGGGUUAaa -5'
28734 5' -47.8 NC_006146.1 + 162812 0.86 0.328701
Target:  5'- -cGGGUAGCAUAUGCUAUCCaGAUa- -3'
miRNA:   3'- aaCCCAUCGUAUACGAUAGGgUUAaa -5'
28734 5' -47.8 NC_006146.1 + 163236 0.88 0.248309
Target:  5'- --cGGUAGCAUAUGCUAUCCUAAUUUa -3'
miRNA:   3'- aacCCAUCGUAUACGAUAGGGUUAAA- -5'
28734 5' -47.8 NC_006146.1 + 163372 0.89 0.211731
Target:  5'- -aGGGUAGUAUAUGCUAUCCUAGUg- -3'
miRNA:   3'- aaCCCAUCGUAUACGAUAGGGUUAaa -5'
28734 5' -47.8 NC_006146.1 + 163342 0.89 0.211731
Target:  5'- uUUGGGUAGCAUAUGUUAUCCUGAUa- -3'
miRNA:   3'- -AACCCAUCGUAUACGAUAGGGUUAaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.