miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28735 3' -48.1 NC_006146.1 + 162896 1.14 0.009008
Target:  5'- aGCAUAUGCUAUCCUAGUACAGCUGGGu -3'
miRNA:   3'- -CGUAUACGAUAGGAUCAUGUCGACCC- -5'
28735 3' -48.1 NC_006146.1 + 163268 0.85 0.421213
Target:  5'- aGCAUAUGCUAUCCUAauuUAGUUGGGu -3'
miRNA:   3'- -CGUAUACGAUAGGAUcauGUCGACCC- -5'
28735 3' -48.1 NC_006146.1 + 163240 0.85 0.421213
Target:  5'- aGCAUAUGCUAUCCUAauuUAGUUGGGu -3'
miRNA:   3'- -CGUAUACGAUAGGAUcauGUCGACCC- -5'
28735 3' -48.1 NC_006146.1 + 163081 0.85 0.421213
Target:  5'- aGCAUAUGCUAUCCUAauuUAGUUGGGu -3'
miRNA:   3'- -CGUAUACGAUAGGAUcauGUCGACCC- -5'
28735 3' -48.1 NC_006146.1 + 163028 0.85 0.421213
Target:  5'- aGCAUAUGCUAUCCUAauuUAGUUGGGu -3'
miRNA:   3'- -CGUAUACGAUAGGAUcauGUCGACCC- -5'
28735 3' -48.1 NC_006146.1 + 163408 0.8 0.69002
Target:  5'- aGCAUAUGCUAUCCUAcUAUA-UUGGGg -3'
miRNA:   3'- -CGUAUACGAUAGGAUcAUGUcGACCC- -5'
28735 3' -48.1 NC_006146.1 + 162924 0.79 0.711172
Target:  5'- aGUAUAUGCUGUCCUAa---AGUUGGGa -3'
miRNA:   3'- -CGUAUACGAUAGGAUcaugUCGACCC- -5'
28735 3' -48.1 NC_006146.1 + 163187 0.76 0.846127
Target:  5'- aGCAUAUGCUuUCCUAauuUAGUUGGGu -3'
miRNA:   3'- -CGUAUACGAuAGGAUcauGUCGACCC- -5'
28735 3' -48.1 NC_006146.1 + 162950 0.75 0.878072
Target:  5'- aGCAUAUGCUAUCUUA--AUAGC-GGGu -3'
miRNA:   3'- -CGUAUACGAUAGGAUcaUGUCGaCCC- -5'
28735 3' -48.1 NC_006146.1 + 163134 0.75 0.878072
Target:  5'- aGCAUAUGCUAcCCUAauuUAGUUGGGu -3'
miRNA:   3'- -CGUAUACGAUaGGAUcauGUCGACCC- -5'
28735 3' -48.1 NC_006146.1 + 134831 0.75 0.899504
Target:  5'- cGguUGUGCuUGUCCUAGUgACAGcCUGGc -3'
miRNA:   3'- -CguAUACG-AUAGGAUCA-UGUC-GACCc -5'
28735 3' -48.1 NC_006146.1 + 48984 0.74 0.918628
Target:  5'- aGCAcguUGCUGaCCUGGga-GGCUGGGg -3'
miRNA:   3'- -CGUau-ACGAUaGGAUCaugUCGACCC- -5'
28735 3' -48.1 NC_006146.1 + 163296 0.74 0.924476
Target:  5'- aGCAUAUGCUAUCCcaauuUAGgUGGGu -3'
miRNA:   3'- -CGUAUACGAUAGGaucauGUCgACCC- -5'
28735 3' -48.1 NC_006146.1 + 162817 0.73 0.945223
Target:  5'- aGCAUAUGCUAUCC-AGaUAUAGUUaGGu -3'
miRNA:   3'- -CGUAUACGAUAGGaUC-AUGUCGAcCC- -5'
28735 3' -48.1 NC_006146.1 + 7968 0.72 0.965357
Target:  5'- aGCAUAUGCUAUCCcaauuUAGgACAGCa--- -3'
miRNA:   3'- -CGUAUACGAUAGG-----AUCaUGUCGaccc -5'
28735 3' -48.1 NC_006146.1 + 74824 0.72 0.965357
Target:  5'- cGCAg--GCUcuuaAUCCUGGUguGCAGCccUGGGu -3'
miRNA:   3'- -CGUauaCGA----UAGGAUCA--UGUCG--ACCC- -5'
28735 3' -48.1 NC_006146.1 + 162229 0.72 0.965357
Target:  5'- ---gGUGCgAUCCUGG-ACAGCUGcGGu -3'
miRNA:   3'- cguaUACGaUAGGAUCaUGUCGAC-CC- -5'
28735 3' -48.1 NC_006146.1 + 162845 0.7 0.988972
Target:  5'- aGCAUAUGCUAUCCUAauauuggAUAGCa--- -3'
miRNA:   3'- -CGUAUACGAUAGGAUca-----UGUCGaccc -5'
28735 3' -48.1 NC_006146.1 + 43986 0.7 0.988972
Target:  5'- aUAUAUGCUAUCCUcauauuuuuGGgauuugcGCGGCgGGGa -3'
miRNA:   3'- cGUAUACGAUAGGA---------UCa------UGUCGaCCC- -5'
28735 3' -48.1 NC_006146.1 + 114159 0.69 0.993703
Target:  5'- gGCGcAUGCUGgcCCUGG-GCAGCaGGGu -3'
miRNA:   3'- -CGUaUACGAUa-GGAUCaUGUCGaCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.