miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28735 3' -48.1 NC_006146.1 + 162896 1.14 0.009008
Target:  5'- aGCAUAUGCUAUCCUAGUACAGCUGGGu -3'
miRNA:   3'- -CGUAUACGAUAGGAUCAUGUCGACCC- -5'
28735 3' -48.1 NC_006146.1 + 162924 0.79 0.711172
Target:  5'- aGUAUAUGCUGUCCUAa---AGUUGGGa -3'
miRNA:   3'- -CGUAUACGAUAGGAUcaugUCGACCC- -5'
28735 3' -48.1 NC_006146.1 + 162950 0.75 0.878072
Target:  5'- aGCAUAUGCUAUCUUA--AUAGC-GGGu -3'
miRNA:   3'- -CGUAUACGAUAGGAUcaUGUCGaCCC- -5'
28735 3' -48.1 NC_006146.1 + 162975 0.66 0.999616
Target:  5'- aGCAUAUaCUAUCCUAaUAgAuCUGGGu -3'
miRNA:   3'- -CGUAUAcGAUAGGAUcAUgUcGACCC- -5'
28735 3' -48.1 NC_006146.1 + 163003 0.68 0.998013
Target:  5'- aGCAUAUGCUAUCCUAGcuuUGCGu----- -3'
miRNA:   3'- -CGUAUACGAUAGGAUC---AUGUcgaccc -5'
28735 3' -48.1 NC_006146.1 + 163028 0.85 0.421213
Target:  5'- aGCAUAUGCUAUCCUAauuUAGUUGGGu -3'
miRNA:   3'- -CGUAUACGAUAGGAUcauGUCGACCC- -5'
28735 3' -48.1 NC_006146.1 + 163081 0.85 0.421213
Target:  5'- aGCAUAUGCUAUCCUAauuUAGUUGGGu -3'
miRNA:   3'- -CGUAUACGAUAGGAUcauGUCGACCC- -5'
28735 3' -48.1 NC_006146.1 + 163134 0.75 0.878072
Target:  5'- aGCAUAUGCUAcCCUAauuUAGUUGGGu -3'
miRNA:   3'- -CGUAUACGAUaGGAUcauGUCGACCC- -5'
28735 3' -48.1 NC_006146.1 + 163187 0.76 0.846127
Target:  5'- aGCAUAUGCUuUCCUAauuUAGUUGGGu -3'
miRNA:   3'- -CGUAUACGAuAGGAUcauGUCGACCC- -5'
28735 3' -48.1 NC_006146.1 + 163240 0.85 0.421213
Target:  5'- aGCAUAUGCUAUCCUAauuUAGUUGGGu -3'
miRNA:   3'- -CGUAUACGAUAGGAUcauGUCGACCC- -5'
28735 3' -48.1 NC_006146.1 + 163268 0.85 0.421213
Target:  5'- aGCAUAUGCUAUCCUAauuUAGUUGGGu -3'
miRNA:   3'- -CGUAUACGAUAGGAUcauGUCGACCC- -5'
28735 3' -48.1 NC_006146.1 + 163296 0.74 0.924476
Target:  5'- aGCAUAUGCUAUCCcaauuUAGgUGGGu -3'
miRNA:   3'- -CGUAUACGAUAGGaucauGUCgACCC- -5'
28735 3' -48.1 NC_006146.1 + 163349 0.68 0.998013
Target:  5'- aGCAUAUGUUAUCCUGaUAU-GUUaGGGu -3'
miRNA:   3'- -CGUAUACGAUAGGAUcAUGuCGA-CCC- -5'
28735 3' -48.1 NC_006146.1 + 163377 0.67 0.999083
Target:  5'- aGUAUAUGCUAUCCUAGUGu------- -3'
miRNA:   3'- -CGUAUACGAUAGGAUCAUgucgaccc -5'
28735 3' -48.1 NC_006146.1 + 163408 0.8 0.69002
Target:  5'- aGCAUAUGCUAUCCUAcUAUA-UUGGGg -3'
miRNA:   3'- -CGUAUACGAUAGGAUcAUGUcGACCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.