miRNA display CGI


Results 1 - 20 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28736 3' -46.1 NC_006146.1 + 162804 1.13 0.015722
Target:  5'- gAUAAGUUCGGGUAGCAUAUGCUAUCCa -3'
miRNA:   3'- -UAUUCAAGCCCAUCGUAUACGAUAGG- -5'
28736 3' -46.1 NC_006146.1 + 163259 0.9 0.300827
Target:  5'- --uAGUU-GGGUAGCAUAUGCUAUCCu -3'
miRNA:   3'- uauUCAAgCCCAUCGUAUACGAUAGG- -5'
28736 3' -46.1 NC_006146.1 + 163287 0.9 0.331982
Target:  5'- --uAGUU-GGGUAGCAUAUGCUAUCCc -3'
miRNA:   3'- uauUCAAgCCCAUCGUAUACGAUAGG- -5'
28736 3' -46.1 NC_006146.1 + 162888 0.88 0.392024
Target:  5'- ----aUUgGGGUAGCAUAUGCUAUCCu -3'
miRNA:   3'- uauucAAgCCCAUCGUAUACGAUAGG- -5'
28736 3' -46.1 NC_006146.1 + 163075 0.87 0.419833
Target:  5'- ------gUGGGUAGCAUAUGCUAUCCu -3'
miRNA:   3'- uauucaaGCCCAUCGUAUACGAUAGG- -5'
28736 3' -46.1 NC_006146.1 + 162992 0.87 0.429365
Target:  5'- --uAGaUCuGGGUAGCAUAUGCUAUCCu -3'
miRNA:   3'- uauUCaAG-CCCAUCGUAUACGAUAGG- -5'
28736 3' -46.1 NC_006146.1 + 163337 0.87 0.448803
Target:  5'- cUAGcUUUGGGUAGCAUAUGUUAUCCu -3'
miRNA:   3'- uAUUcAAGCCCAUCGUAUACGAUAGG- -5'
28736 3' -46.1 NC_006146.1 + 163364 0.86 0.478844
Target:  5'- gAUAuGUUaGGGUAGUAUAUGCUAUCCu -3'
miRNA:   3'- -UAUuCAAgCCCAUCGUAUACGAUAGG- -5'
28736 3' -46.1 NC_006146.1 + 162836 0.84 0.584999
Target:  5'- --uAGUUa-GGUAGCAUAUGCUAUCCu -3'
miRNA:   3'- uauUCAAgcCCAUCGUAUACGAUAGG- -5'
28736 3' -46.1 NC_006146.1 + 162918 0.83 0.640004
Target:  5'- ------cUGGGUAGUAUAUGCUGUCCu -3'
miRNA:   3'- uauucaaGCCCAUCGUAUACGAUAGG- -5'
28736 3' -46.1 NC_006146.1 + 162939 0.81 0.748101
Target:  5'- -aAAGUU-GGGaUAGCAUAUGCUAUCUu -3'
miRNA:   3'- uaUUCAAgCCC-AUCGUAUACGAUAGG- -5'
28736 3' -46.1 NC_006146.1 + 163233 0.81 0.748101
Target:  5'- ----uUUC-GGUAGCAUAUGCUAUCCu -3'
miRNA:   3'- uauucAAGcCCAUCGUAUACGAUAGG- -5'
28736 3' -46.1 NC_006146.1 + 8146 0.78 0.844418
Target:  5'- ---uGUU--GGUAGCGUAUGCUAUCCa -3'
miRNA:   3'- uauuCAAgcCCAUCGUAUACGAUAGG- -5'
28736 3' -46.1 NC_006146.1 + 163016 0.77 0.906027
Target:  5'- cUAGcUUUGcGUAGCAUAUGCUAUCCu -3'
miRNA:   3'- uAUUcAAGCcCAUCGUAUACGAUAGG- -5'
28736 3' -46.1 NC_006146.1 + 7779 0.76 0.9188
Target:  5'- -------aGGGUAGCAUAUGCUA-CCg -3'
miRNA:   3'- uauucaagCCCAUCGUAUACGAUaGG- -5'
28736 3' -46.1 NC_006146.1 + 162963 0.76 0.924773
Target:  5'- uUAAuagCGGGUAGCAUAUaCUAUCCu -3'
miRNA:   3'- uAUUcaaGCCCAUCGUAUAcGAUAGG- -5'
28736 3' -46.1 NC_006146.1 + 9737 0.76 0.930468
Target:  5'- -----cUgGGGUAGUAUAUGCUAUCa -3'
miRNA:   3'- uauucaAgCCCAUCGUAUACGAUAGg -5'
28736 3' -46.1 NC_006146.1 + 7614 0.73 0.978071
Target:  5'- -----aUUGGGaUAGCAUAUGCUAcCCa -3'
miRNA:   3'- uauucaAGCCC-AUCGUAUACGAUaGG- -5'
28736 3' -46.1 NC_006146.1 + 162751 0.73 0.984692
Target:  5'- uAUAGGUUUGGaUAGCAUAcGCUA-CCa -3'
miRNA:   3'- -UAUUCAAGCCcAUCGUAUaCGAUaGG- -5'
28736 3' -46.1 NC_006146.1 + 43973 0.72 0.98652
Target:  5'- cUGAuggCGGGUAaUAUAUGCUAUCCu -3'
miRNA:   3'- uAUUcaaGCCCAUcGUAUACGAUAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.