miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28736 3' -46.1 NC_006146.1 + 7501 0.67 0.999937
Target:  5'- --uAGUa-GGaUAGCAUAUGCUAUCa -3'
miRNA:   3'- uauUCAagCCcAUCGUAUACGAUAGg -5'
28736 3' -46.1 NC_006146.1 + 7614 0.73 0.978071
Target:  5'- -----aUUGGGaUAGCAUAUGCUAcCCa -3'
miRNA:   3'- uauucaAGCCC-AUCGUAUACGAUaGG- -5'
28736 3' -46.1 NC_006146.1 + 7779 0.76 0.9188
Target:  5'- -------aGGGUAGCAUAUGCUA-CCg -3'
miRNA:   3'- uauucaagCCCAUCGUAUACGAUaGG- -5'
28736 3' -46.1 NC_006146.1 + 7904 0.66 0.999982
Target:  5'- -aAAGcuaGGaUAGCAUAUGCUAcCCa -3'
miRNA:   3'- uaUUCaagCCcAUCGUAUACGAUaGG- -5'
28736 3' -46.1 NC_006146.1 + 8146 0.78 0.844418
Target:  5'- ---uGUU--GGUAGCGUAUGCUAUCCa -3'
miRNA:   3'- uauuCAAgcCCAUCGUAUACGAUAGG- -5'
28736 3' -46.1 NC_006146.1 + 9310 0.72 0.98652
Target:  5'- ---cGgcCGGGcAGCAUuUGCUAUCCg -3'
miRNA:   3'- uauuCaaGCCCaUCGUAuACGAUAGG- -5'
28736 3' -46.1 NC_006146.1 + 9737 0.76 0.930468
Target:  5'- -----cUgGGGUAGUAUAUGCUAUCa -3'
miRNA:   3'- uauucaAgCCCAUCGUAUACGAUAGg -5'
28736 3' -46.1 NC_006146.1 + 17790 0.66 0.999975
Target:  5'- cAUGAGgguccCGGGcuccgagAGCAUGUGCUAcUCg -3'
miRNA:   3'- -UAUUCaa---GCCCa------UCGUAUACGAUaGG- -5'
28736 3' -46.1 NC_006146.1 + 18940 0.66 0.999975
Target:  5'- -cGAGgaCGGGaagGGCAUGUGgUGcgCCa -3'
miRNA:   3'- uaUUCaaGCCCa--UCGUAUACgAUa-GG- -5'
28736 3' -46.1 NC_006146.1 + 43949 0.67 0.999937
Target:  5'- -aAGGcgCGGGaUAGUGUAUGCUAc-- -3'
miRNA:   3'- uaUUCaaGCCC-AUCGUAUACGAUagg -5'
28736 3' -46.1 NC_006146.1 + 43973 0.72 0.98652
Target:  5'- cUGAuggCGGGUAaUAUAUGCUAUCCu -3'
miRNA:   3'- uAUUcaaGCCCAUcGUAUACGAUAGG- -5'
28736 3' -46.1 NC_006146.1 + 67440 0.72 0.988017
Target:  5'- gGUAAGUcucgCGGGUGaaguaggugcGCAUGUGCUccgcgaagccccgGUCCa -3'
miRNA:   3'- -UAUUCAa---GCCCAU----------CGUAUACGA-------------UAGG- -5'
28736 3' -46.1 NC_006146.1 + 77417 0.68 0.999691
Target:  5'- aGUGAGUUCuGGUAGgAgacuCUAUCCa -3'
miRNA:   3'- -UAUUCAAGcCCAUCgUauacGAUAGG- -5'
28736 3' -46.1 NC_006146.1 + 152886 0.68 0.999505
Target:  5'- -aAGGUcugcaGGGUGGCG-AUGCcGUCCa -3'
miRNA:   3'- uaUUCAag---CCCAUCGUaUACGaUAGG- -5'
28736 3' -46.1 NC_006146.1 + 161615 0.66 0.999975
Target:  5'- ------cCGGc-AGUAUGUGCUAUCCa -3'
miRNA:   3'- uauucaaGCCcaUCGUAUACGAUAGG- -5'
28736 3' -46.1 NC_006146.1 + 162751 0.73 0.984692
Target:  5'- uAUAGGUUUGGaUAGCAUAcGCUA-CCa -3'
miRNA:   3'- -UAUUCAAGCCcAUCGUAUaCGAUaGG- -5'
28736 3' -46.1 NC_006146.1 + 162804 1.13 0.015722
Target:  5'- gAUAAGUUCGGGUAGCAUAUGCUAUCCa -3'
miRNA:   3'- -UAUUCAAGCCCAUCGUAUACGAUAGG- -5'
28736 3' -46.1 NC_006146.1 + 162836 0.84 0.584999
Target:  5'- --uAGUUa-GGUAGCAUAUGCUAUCCu -3'
miRNA:   3'- uauUCAAgcCCAUCGUAUACGAUAGG- -5'
28736 3' -46.1 NC_006146.1 + 162888 0.88 0.392024
Target:  5'- ----aUUgGGGUAGCAUAUGCUAUCCu -3'
miRNA:   3'- uauucAAgCCCAUCGUAUACGAUAGG- -5'
28736 3' -46.1 NC_006146.1 + 162918 0.83 0.640004
Target:  5'- ------cUGGGUAGUAUAUGCUGUCCu -3'
miRNA:   3'- uauucaaGCCCAUCGUAUACGAUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.