Results 21 - 36 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28736 | 3' | -46.1 | NC_006146.1 | + | 162963 | 0.76 | 0.924773 |
Target: 5'- uUAAuagCGGGUAGCAUAUaCUAUCCu -3' miRNA: 3'- uAUUcaaGCCCAUCGUAUAcGAUAGG- -5' |
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28736 | 3' | -46.1 | NC_006146.1 | + | 7779 | 0.76 | 0.9188 |
Target: 5'- -------aGGGUAGCAUAUGCUA-CCg -3' miRNA: 3'- uauucaagCCCAUCGUAUACGAUaGG- -5' |
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28736 | 3' | -46.1 | NC_006146.1 | + | 163016 | 0.77 | 0.906027 |
Target: 5'- cUAGcUUUGcGUAGCAUAUGCUAUCCu -3' miRNA: 3'- uAUUcAAGCcCAUCGUAUACGAUAGG- -5' |
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28736 | 3' | -46.1 | NC_006146.1 | + | 8146 | 0.78 | 0.844418 |
Target: 5'- ---uGUU--GGUAGCGUAUGCUAUCCa -3' miRNA: 3'- uauuCAAgcCCAUCGUAUACGAUAGG- -5' |
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28736 | 3' | -46.1 | NC_006146.1 | + | 162939 | 0.81 | 0.748101 |
Target: 5'- -aAAGUU-GGGaUAGCAUAUGCUAUCUu -3' miRNA: 3'- uaUUCAAgCCC-AUCGUAUACGAUAGG- -5' |
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28736 | 3' | -46.1 | NC_006146.1 | + | 163233 | 0.81 | 0.748101 |
Target: 5'- ----uUUC-GGUAGCAUAUGCUAUCCu -3' miRNA: 3'- uauucAAGcCCAUCGUAUACGAUAGG- -5' |
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28736 | 3' | -46.1 | NC_006146.1 | + | 162918 | 0.83 | 0.640004 |
Target: 5'- ------cUGGGUAGUAUAUGCUGUCCu -3' miRNA: 3'- uauucaaGCCCAUCGUAUACGAUAGG- -5' |
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28736 | 3' | -46.1 | NC_006146.1 | + | 162836 | 0.84 | 0.584999 |
Target: 5'- --uAGUUa-GGUAGCAUAUGCUAUCCu -3' miRNA: 3'- uauUCAAgcCCAUCGUAUACGAUAGG- -5' |
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28736 | 3' | -46.1 | NC_006146.1 | + | 163364 | 0.86 | 0.478844 |
Target: 5'- gAUAuGUUaGGGUAGUAUAUGCUAUCCu -3' miRNA: 3'- -UAUuCAAgCCCAUCGUAUACGAUAGG- -5' |
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28736 | 3' | -46.1 | NC_006146.1 | + | 163337 | 0.87 | 0.448803 |
Target: 5'- cUAGcUUUGGGUAGCAUAUGUUAUCCu -3' miRNA: 3'- uAUUcAAGCCCAUCGUAUACGAUAGG- -5' |
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28736 | 3' | -46.1 | NC_006146.1 | + | 162992 | 0.87 | 0.429365 |
Target: 5'- --uAGaUCuGGGUAGCAUAUGCUAUCCu -3' miRNA: 3'- uauUCaAG-CCCAUCGUAUACGAUAGG- -5' |
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28736 | 3' | -46.1 | NC_006146.1 | + | 163075 | 0.87 | 0.419833 |
Target: 5'- ------gUGGGUAGCAUAUGCUAUCCu -3' miRNA: 3'- uauucaaGCCCAUCGUAUACGAUAGG- -5' |
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28736 | 3' | -46.1 | NC_006146.1 | + | 162888 | 0.88 | 0.392024 |
Target: 5'- ----aUUgGGGUAGCAUAUGCUAUCCu -3' miRNA: 3'- uauucAAgCCCAUCGUAUACGAUAGG- -5' |
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28736 | 3' | -46.1 | NC_006146.1 | + | 163287 | 0.9 | 0.331982 |
Target: 5'- --uAGUU-GGGUAGCAUAUGCUAUCCc -3' miRNA: 3'- uauUCAAgCCCAUCGUAUACGAUAGG- -5' |
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28736 | 3' | -46.1 | NC_006146.1 | + | 163259 | 0.9 | 0.300827 |
Target: 5'- --uAGUU-GGGUAGCAUAUGCUAUCCu -3' miRNA: 3'- uauUCAAgCCCAUCGUAUACGAUAGG- -5' |
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28736 | 3' | -46.1 | NC_006146.1 | + | 162804 | 1.13 | 0.015722 |
Target: 5'- gAUAAGUUCGGGUAGCAUAUGCUAUCCa -3' miRNA: 3'- -UAUUCAAGCCCAUCGUAUACGAUAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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