Results 21 - 36 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28736 | 3' | -46.1 | NC_006146.1 | + | 17790 | 0.66 | 0.999975 |
Target: 5'- cAUGAGgguccCGGGcuccgagAGCAUGUGCUAcUCg -3' miRNA: 3'- -UAUUCaa---GCCCa------UCGUAUACGAUaGG- -5' |
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28736 | 3' | -46.1 | NC_006146.1 | + | 163401 | 0.67 | 0.99989 |
Target: 5'- ----uUUUGa-UAGCAUAUGCUAUCCu -3' miRNA: 3'- uauucAAGCccAUCGUAUACGAUAGG- -5' |
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28736 | 3' | -46.1 | NC_006146.1 | + | 163206 | 0.7 | 0.998268 |
Target: 5'- --uAGUU-GGGUAGUGUAUaCUAUCCu -3' miRNA: 3'- uauUCAAgCCCAUCGUAUAcGAUAGG- -5' |
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28736 | 3' | -46.1 | NC_006146.1 | + | 163153 | 0.7 | 0.998268 |
Target: 5'- --uAGUU-GGGUAGUGUAUaCUAUCCu -3' miRNA: 3'- uauUCAAgCCCAUCGUAUAcGAUAGG- -5' |
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28736 | 3' | -46.1 | NC_006146.1 | + | 163100 | 0.7 | 0.998268 |
Target: 5'- --uAGUU-GGGUAGUGUAUaCUAUCCu -3' miRNA: 3'- uauUCAAgCCCAUCGUAUAcGAUAGG- -5' |
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28736 | 3' | -46.1 | NC_006146.1 | + | 163127 | 0.71 | 0.995803 |
Target: 5'- ----uUUC-GGUAGCAUAUGCUAcCCu -3' miRNA: 3'- uauucAAGcCCAUCGUAUACGAUaGG- -5' |
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28736 | 3' | -46.1 | NC_006146.1 | + | 163180 | 0.72 | 0.992211 |
Target: 5'- ----uUUC-GGUAGCAUAUGCUuUCCu -3' miRNA: 3'- uauucAAGcCCAUCGUAUACGAuAGG- -5' |
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28736 | 3' | -46.1 | NC_006146.1 | + | 162751 | 0.73 | 0.984692 |
Target: 5'- uAUAGGUUUGGaUAGCAUAcGCUA-CCa -3' miRNA: 3'- -UAUUCAAGCCcAUCGUAUaCGAUaGG- -5' |
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28736 | 3' | -46.1 | NC_006146.1 | + | 162963 | 0.76 | 0.924773 |
Target: 5'- uUAAuagCGGGUAGCAUAUaCUAUCCu -3' miRNA: 3'- uAUUcaaGCCCAUCGUAUAcGAUAGG- -5' |
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28736 | 3' | -46.1 | NC_006146.1 | + | 163016 | 0.77 | 0.906027 |
Target: 5'- cUAGcUUUGcGUAGCAUAUGCUAUCCu -3' miRNA: 3'- uAUUcAAGCcCAUCGUAUACGAUAGG- -5' |
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28736 | 3' | -46.1 | NC_006146.1 | + | 162939 | 0.81 | 0.748101 |
Target: 5'- -aAAGUU-GGGaUAGCAUAUGCUAUCUu -3' miRNA: 3'- uaUUCAAgCCC-AUCGUAUACGAUAGG- -5' |
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28736 | 3' | -46.1 | NC_006146.1 | + | 163233 | 0.81 | 0.748101 |
Target: 5'- ----uUUC-GGUAGCAUAUGCUAUCCu -3' miRNA: 3'- uauucAAGcCCAUCGUAUACGAUAGG- -5' |
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28736 | 3' | -46.1 | NC_006146.1 | + | 162918 | 0.83 | 0.640004 |
Target: 5'- ------cUGGGUAGUAUAUGCUGUCCu -3' miRNA: 3'- uauucaaGCCCAUCGUAUACGAUAGG- -5' |
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28736 | 3' | -46.1 | NC_006146.1 | + | 162836 | 0.84 | 0.584999 |
Target: 5'- --uAGUUa-GGUAGCAUAUGCUAUCCu -3' miRNA: 3'- uauUCAAgcCCAUCGUAUACGAUAGG- -5' |
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28736 | 3' | -46.1 | NC_006146.1 | + | 163364 | 0.86 | 0.478844 |
Target: 5'- gAUAuGUUaGGGUAGUAUAUGCUAUCCu -3' miRNA: 3'- -UAUuCAAgCCCAUCGUAUACGAUAGG- -5' |
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28736 | 3' | -46.1 | NC_006146.1 | + | 161615 | 0.66 | 0.999975 |
Target: 5'- ------cCGGc-AGUAUGUGCUAUCCa -3' miRNA: 3'- uauucaaGCCcaUCGUAUACGAUAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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