miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28736 5' -44.2 NC_006146.1 + 162838 1.04 0.068744
Target:  5'- gUUAGGUAGCAUAUGCUAUCCUAAUAUu -3'
miRNA:   3'- -AAUCCAUCGUAUACGAUAGGAUUAUA- -5'
28736 5' -44.2 NC_006146.1 + 162891 1 0.113959
Target:  5'- -gGGGUAGCAUAUGCUAUCCUAGUAc -3'
miRNA:   3'- aaUCCAUCGUAUACGAUAGGAUUAUa -5'
28736 5' -44.2 NC_006146.1 + 163342 0.99 0.124406
Target:  5'- uUUGGGUAGCAUAUGUUAUCCUGAUAUg -3'
miRNA:   3'- -AAUCCAUCGUAUACGAUAGGAUUAUA- -5'
28736 5' -44.2 NC_006146.1 + 163261 0.98 0.143808
Target:  5'- gUUGGGUAGCAUAUGCUAUCCUAAUu- -3'
miRNA:   3'- -AAUCCAUCGUAUACGAUAGGAUUAua -5'
28736 5' -44.2 NC_006146.1 + 163075 0.98 0.148006
Target:  5'- gUGGGUAGCAUAUGCUAUCCUAAUu- -3'
miRNA:   3'- aAUCCAUCGUAUACGAUAGGAUUAua -5'
28736 5' -44.2 NC_006146.1 + 163372 0.97 0.15674
Target:  5'- -aGGGUAGUAUAUGCUAUCCUAGUGUa -3'
miRNA:   3'- aaUCCAUCGUAUACGAUAGGAUUAUA- -5'
28736 5' -44.2 NC_006146.1 + 162997 0.95 0.196491
Target:  5'- cUGGGUAGCAUAUGCUAUCCUAGc-- -3'
miRNA:   3'- aAUCCAUCGUAUACGAUAGGAUUaua -5'
28736 5' -44.2 NC_006146.1 + 162812 0.92 0.279693
Target:  5'- -cGGGUAGCAUAUGCUAUCCaGAUAUa -3'
miRNA:   3'- aaUCCAUCGUAUACGAUAGGaUUAUA- -5'
28736 5' -44.2 NC_006146.1 + 162918 0.92 0.287137
Target:  5'- cUGGGUAGUAUAUGCUGUCCUAAa-- -3'
miRNA:   3'- aAUCCAUCGUAUACGAUAGGAUUaua -5'
28736 5' -44.2 NC_006146.1 + 163236 0.92 0.302491
Target:  5'- --cGGUAGCAUAUGCUAUCCUAAUu- -3'
miRNA:   3'- aauCCAUCGUAUACGAUAGGAUUAua -5'
28736 5' -44.2 NC_006146.1 + 162942 0.88 0.457727
Target:  5'- gUUGGGaUAGCAUAUGCUAUCUUAAUAg -3'
miRNA:   3'- -AAUCC-AUCGUAUACGAUAGGAUUAUa -5'
28736 5' -44.2 NC_006146.1 + 163289 0.88 0.467088
Target:  5'- gUUGGGUAGCAUAUGCUAUCCcaauuuaggugggUAGUGUa -3'
miRNA:   3'- -AAUCCAUCGUAUACGAUAGG-------------AUUAUA- -5'
28736 5' -44.2 NC_006146.1 + 162970 0.85 0.589184
Target:  5'- -cGGGUAGCAUAUaCUAUCCUAAUAg -3'
miRNA:   3'- aaUCCAUCGUAUAcGAUAGGAUUAUa -5'
28736 5' -44.2 NC_006146.1 + 163025 0.83 0.680685
Target:  5'- ---cGUAGCAUAUGCUAUCCUAAUu- -3'
miRNA:   3'- aaucCAUCGUAUACGAUAGGAUUAua -5'
28736 5' -44.2 NC_006146.1 + 163183 0.82 0.736611
Target:  5'- --cGGUAGCAUAUGCUuUCCUAAUu- -3'
miRNA:   3'- aauCCAUCGUAUACGAuAGGAUUAua -5'
28736 5' -44.2 NC_006146.1 + 8149 0.82 0.768901
Target:  5'- --uGGUAGCGUAUGCUAUCCa----- -3'
miRNA:   3'- aauCCAUCGUAUACGAUAGGauuaua -5'
28736 5' -44.2 NC_006146.1 + 163130 0.81 0.779376
Target:  5'- --cGGUAGCAUAUGCUAcCCUAAUu- -3'
miRNA:   3'- aauCCAUCGUAUACGAUaGGAUUAua -5'
28736 5' -44.2 NC_006146.1 + 8064 0.77 0.929259
Target:  5'- aUUAGGaUAGCAUAUGCUA-CCUAAc-- -3'
miRNA:   3'- -AAUCC-AUCGUAUACGAUaGGAUUaua -5'
28736 5' -44.2 NC_006146.1 + 162781 0.76 0.950236
Target:  5'- aUUAGGaUAGCAgAUGCUAUCCaGAUAa -3'
miRNA:   3'- -AAUCC-AUCGUaUACGAUAGGaUUAUa -5'
28736 5' -44.2 NC_006146.1 + 163406 0.76 0.962917
Target:  5'- ----aUAGCAUAUGCUAUCCUAcUAUa -3'
miRNA:   3'- aauccAUCGUAUACGAUAGGAUuAUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.