miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28736 5' -44.2 NC_006146.1 + 8149 0.82 0.768901
Target:  5'- --uGGUAGCGUAUGCUAUCCa----- -3'
miRNA:   3'- aauCCAUCGUAUACGAUAGGauuaua -5'
28736 5' -44.2 NC_006146.1 + 7935 0.67 0.99999
Target:  5'- aUUAGGaUAGUAUAUGCUAcCCg----- -3'
miRNA:   3'- -AAUCC-AUCGUAUACGAUaGGauuaua -5'
28736 5' -44.2 NC_006146.1 + 49279 0.66 0.999998
Target:  5'- -gAGGUGGUcUAUGCUcUCCUcgaaggaggaGAUGUa -3'
miRNA:   3'- aaUCCAUCGuAUACGAuAGGA----------UUAUA- -5'
28736 5' -44.2 NC_006146.1 + 162214 0.66 0.999999
Target:  5'- -cAGGUGGCucagauugGUGCgAUCCUGGa-- -3'
miRNA:   3'- aaUCCAUCGua------UACGaUAGGAUUaua -5'
28736 5' -44.2 NC_006146.1 + 8014 0.74 0.985415
Target:  5'- cUAGGaUAGCAUAUGCUAcCCcAAUAUu -3'
miRNA:   3'- aAUCC-AUCGUAUACGAUaGGaUUAUA- -5'
28736 5' -44.2 NC_006146.1 + 8122 0.73 0.990364
Target:  5'- cUGGaUAGCAUcUGCUAUCCUAAUu- -3'
miRNA:   3'- aAUCcAUCGUAuACGAUAGGAUUAua -5'
28736 5' -44.2 NC_006146.1 + 43955 0.73 0.992851
Target:  5'- -cGGGaUAGUGUAUGCUA-CCUGAUGg -3'
miRNA:   3'- aaUCC-AUCGUAUACGAUaGGAUUAUa -5'
28736 5' -44.2 NC_006146.1 + 43980 0.73 0.992851
Target:  5'- -cGGGUAaUAUAUGCUAUCCUcAUAUu -3'
miRNA:   3'- aaUCCAUcGUAUACGAUAGGAuUAUA- -5'
28736 5' -44.2 NC_006146.1 + 7908 0.71 0.998827
Target:  5'- cUAGGaUAGCAUAUGCUAcCCa----- -3'
miRNA:   3'- aAUCC-AUCGUAUACGAUaGGauuaua -5'
28736 5' -44.2 NC_006146.1 + 8042 0.67 0.999971
Target:  5'- -aAGaUAGUAUAUGCUAUCCa----- -3'
miRNA:   3'- aaUCcAUCGUAUACGAUAGGauuaua -5'
28736 5' -44.2 NC_006146.1 + 7963 0.7 0.999053
Target:  5'- -aAGaUAGCAUAUGCUAUCCcAAUu- -3'
miRNA:   3'- aaUCcAUCGUAUACGAUAGGaUUAua -5'
28736 5' -44.2 NC_006146.1 + 7829 0.71 0.997857
Target:  5'- aUUAGGaUAGCAUAUGCUAcCCa----- -3'
miRNA:   3'- -AAUCC-AUCGUAUACGAUaGGauuaua -5'
28736 5' -44.2 NC_006146.1 + 8064 0.77 0.929259
Target:  5'- aUUAGGaUAGCAUAUGCUA-CCUAAc-- -3'
miRNA:   3'- -AAUCC-AUCGUAUACGAUaGGAUUaua -5'
28736 5' -44.2 NC_006146.1 + 7670 0.7 0.99924
Target:  5'- aUUAGGaUAGCAUAUGCUA-CCg----- -3'
miRNA:   3'- -AAUCC-AUCGUAUACGAUaGGauuaua -5'
28736 5' -44.2 NC_006146.1 + 7779 0.75 0.97
Target:  5'- -aGGGUAGCAUAUGCUA-CCg----- -3'
miRNA:   3'- aaUCCAUCGUAUACGAUaGGauuaua -5'
28736 5' -44.2 NC_006146.1 + 7642 0.71 0.997857
Target:  5'- aUUAGGaUAGCAUAUGCUAcCCa----- -3'
miRNA:   3'- -AAUCC-AUCGUAUACGAUaGGauuaua -5'
28736 5' -44.2 NC_006146.1 + 9314 0.7 0.999521
Target:  5'- -cGGGcAGCAUuUGCUAUCCggcgGGUAg -3'
miRNA:   3'- aaUCCaUCGUAuACGAUAGGa---UUAUa -5'
28736 5' -44.2 NC_006146.1 + 67459 0.66 0.999992
Target:  5'- gUAGGUGcGCAUGUGCUccgcgaagccccgGUCCa----- -3'
miRNA:   3'- aAUCCAU-CGUAUACGA-------------UAGGauuaua -5'
28736 5' -44.2 NC_006146.1 + 9739 0.75 0.978727
Target:  5'- -gGGGUAGUAUAUGCUAUCa------ -3'
miRNA:   3'- aaUCCAUCGUAUACGAUAGgauuaua -5'
28736 5' -44.2 NC_006146.1 + 7503 0.73 0.990364
Target:  5'- gUAGGaUAGCAUAUGCUAUCa------ -3'
miRNA:   3'- aAUCC-AUCGUAUACGAUAGgauuaua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.