miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28737 3' -58 NC_006146.1 + 4952 0.68 0.759061
Target:  5'- gCCCCGGGGAccag--GgGCCACGaGAGc -3'
miRNA:   3'- -GGGGUCCCUcaugaaCgCGGUGC-CUC- -5'
28737 3' -58 NC_006146.1 + 6377 0.69 0.700768
Target:  5'- gCCCUGGGGuccguuugguaccGGUccuCUUGgGCCAUGGGGu -3'
miRNA:   3'- -GGGGUCCC-------------UCAu--GAACgCGGUGCCUC- -5'
28737 3' -58 NC_006146.1 + 10396 0.68 0.777406
Target:  5'- gCUCAGGGuGGUGCUgUGCuaCACGGuGg -3'
miRNA:   3'- gGGGUCCC-UCAUGA-ACGcgGUGCCuC- -5'
28737 3' -58 NC_006146.1 + 21429 0.72 0.524373
Target:  5'- uCCCCAuGGGGGaGCUcUGCuucuCCACGGAGc -3'
miRNA:   3'- -GGGGU-CCCUCaUGA-ACGc---GGUGCCUC- -5'
28737 3' -58 NC_006146.1 + 22127 0.69 0.721163
Target:  5'- -aCCGGGGAucGUGCUguUGCGCCcCGGc- -3'
miRNA:   3'- ggGGUCCCU--CAUGA--ACGCGGuGCCuc -5'
28737 3' -58 NC_006146.1 + 34090 0.66 0.881902
Target:  5'- gUCCCGGGGGGcagccGCgacccagcGCGCCccguucACGGGGg -3'
miRNA:   3'- -GGGGUCCCUCa----UGaa------CGCGG------UGCCUC- -5'
28737 3' -58 NC_006146.1 + 35208 0.69 0.730767
Target:  5'- gUCCCAGGGAGggaagaGgGCuCugGGAGa -3'
miRNA:   3'- -GGGGUCCCUCaugaa-CgCG-GugCCUC- -5'
28737 3' -58 NC_006146.1 + 36216 0.67 0.795258
Target:  5'- uCCCC-GGGAGcGCaaGCcgGCCGgGGAGg -3'
miRNA:   3'- -GGGGuCCCUCaUGaaCG--CGGUgCCUC- -5'
28737 3' -58 NC_006146.1 + 39872 0.68 0.786397
Target:  5'- gCCCgGGGGAGgagGCUgagGCugagcgGCCuGCGGGGc -3'
miRNA:   3'- -GGGgUCCCUCa--UGAa--CG------CGG-UGCCUC- -5'
28737 3' -58 NC_006146.1 + 40536 0.7 0.661318
Target:  5'- uCCCgGGGGAGcucucagccccucUGCacagugaagcUGCGCCACGGAc -3'
miRNA:   3'- -GGGgUCCCUC-------------AUGa---------ACGCGGUGCCUc -5'
28737 3' -58 NC_006146.1 + 41263 0.69 0.69195
Target:  5'- uUCCCGGGcGGaGCacGCGcCCGCGGAGg -3'
miRNA:   3'- -GGGGUCCcUCaUGaaCGC-GGUGCCUC- -5'
28737 3' -58 NC_006146.1 + 45060 0.68 0.786397
Target:  5'- uCCCUAGGGGcgGCUgagGUGCCucgUGGGGa -3'
miRNA:   3'- -GGGGUCCCUcaUGAa--CGCGGu--GCCUC- -5'
28737 3' -58 NC_006146.1 + 45662 0.67 0.820971
Target:  5'- aUCCAGGGAG-ACcgucucCGCCAgGGAGc -3'
miRNA:   3'- gGGGUCCCUCaUGaac---GCGGUgCCUC- -5'
28737 3' -58 NC_006146.1 + 48952 0.66 0.879844
Target:  5'- gCCUCAGGGAGUugugggagcgauugGCgaugagcacgUUGCuGaCCugGGAGg -3'
miRNA:   3'- -GGGGUCCCUCA--------------UG----------AACG-C-GGugCCUC- -5'
28737 3' -58 NC_006146.1 + 48971 0.69 0.711486
Target:  5'- uUCCCGGGGA-UGa--GCGUCugGGAGa -3'
miRNA:   3'- -GGGGUCCCUcAUgaaCGCGGugCCUC- -5'
28737 3' -58 NC_006146.1 + 53329 0.66 0.874967
Target:  5'- gCCCGaGGAGgcCcgGCgGCCGCGGGGc -3'
miRNA:   3'- gGGGUcCCUCauGaaCG-CGGUGCCUC- -5'
28737 3' -58 NC_006146.1 + 54008 0.66 0.852948
Target:  5'- cCCUCAGGGccGGcACcaggugGCGCCucCGGAGg -3'
miRNA:   3'- -GGGGUCCC--UCaUGaa----CGCGGu-GCCUC- -5'
28737 3' -58 NC_006146.1 + 56317 0.68 0.759061
Target:  5'- gCCCAGGccGUAgcUGCGCCGCGaGAa -3'
miRNA:   3'- gGGGUCCcuCAUgaACGCGGUGC-CUc -5'
28737 3' -58 NC_006146.1 + 56568 0.72 0.543639
Target:  5'- aCUCCAGGGuGGUGaugcagGCGCCugGGGa -3'
miRNA:   3'- -GGGGUCCC-UCAUgaa---CGCGGugCCUc -5'
28737 3' -58 NC_006146.1 + 56749 0.69 0.711486
Target:  5'- gCCCAGGGccaGCaUGCGCCuggucCGGAGc -3'
miRNA:   3'- gGGGUCCCucaUGaACGCGGu----GCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.