Results 21 - 40 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28737 | 3' | -58 | NC_006146.1 | + | 169407 | 0.66 | 0.860485 |
Target: 5'- gCCCCucuccuGGGAGgccACgUGUGgaggcCCGCGGAGa -3' miRNA: 3'- -GGGGu-----CCCUCa--UGaACGC-----GGUGCCUC- -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 113645 | 0.66 | 0.860485 |
Target: 5'- gCUCCGGGGGauGgcCUUGCuGaCCACGGGc -3' miRNA: 3'- -GGGGUCCCU--CauGAACG-C-GGUGCCUc -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 141701 | 0.66 | 0.860485 |
Target: 5'- aCCCgguGGGGAGacaGCUgagggGgGCCGgGGAGg -3' miRNA: 3'- gGGG---UCCCUCa--UGAa----CgCGGUgCCUC- -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 167543 | 0.66 | 0.860485 |
Target: 5'- gCCCCucuccuGGGAGgccACgUGUGgaggcCCGCGGAGa -3' miRNA: 3'- -GGGGu-----CCCUCa--UGaACGC-----GGUGCCUC- -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 170690 | 0.66 | 0.852948 |
Target: 5'- gCCCCGGGGAc------CGUCGCGGGGg -3' miRNA: 3'- -GGGGUCCCUcaugaacGCGGUGCCUC- -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 54008 | 0.66 | 0.852948 |
Target: 5'- cCCUCAGGGccGGcACcaggugGCGCCucCGGAGg -3' miRNA: 3'- -GGGGUCCC--UCaUGaa----CGCGGu-GCCUC- -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 135110 | 0.66 | 0.852948 |
Target: 5'- uUCCCAGGGuuuGggUUUGCuCCGgCGGGGg -3' miRNA: 3'- -GGGGUCCCu--CauGAACGcGGU-GCCUC- -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 115233 | 0.67 | 0.837313 |
Target: 5'- aCCCAGGGAGcccaGCUgagagGC-CCAgGGAu -3' miRNA: 3'- gGGGUCCCUCa---UGAa----CGcGGUgCCUc -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 123523 | 0.67 | 0.837313 |
Target: 5'- aCCCCAGGcGGGUcGCggGUGgCAaGGAGa -3' miRNA: 3'- -GGGGUCC-CUCA-UGaaCGCgGUgCCUC- -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 157738 | 0.67 | 0.829227 |
Target: 5'- -gCCGGGcaggccGGGU-CUUGgGCCugGGAGg -3' miRNA: 3'- ggGGUCC------CUCAuGAACgCGGugCCUC- -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 151583 | 0.67 | 0.829227 |
Target: 5'- -gCCGGGcaggccGGGU-CUUGgGCCugGGAGg -3' miRNA: 3'- ggGGUCC------CUCAuGAACgCGGugCCUC- -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 148505 | 0.67 | 0.829227 |
Target: 5'- -gCCGGGcaggccGGGU-CUUGgGCCugGGAGg -3' miRNA: 3'- ggGGUCC------CUCAuGAACgCGGugCCUC- -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 145427 | 0.67 | 0.829227 |
Target: 5'- -gCCGGGcaggccGGGU-CUUGgGCCugGGAGg -3' miRNA: 3'- ggGGUCC------CUCAuGAACgCGGugCCUC- -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 170090 | 0.67 | 0.829227 |
Target: 5'- gCCgGcGGGAGggGCcgGCGCCGCaGGGGg -3' miRNA: 3'- gGGgU-CCCUCa-UGaaCGCGGUG-CCUC- -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 142349 | 0.67 | 0.829227 |
Target: 5'- -gCCGGGcaggccGGGU-CUUGgGCCugGGAGg -3' miRNA: 3'- ggGGUCC------CUCAuGAACgCGGugCCUC- -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 102521 | 0.67 | 0.829227 |
Target: 5'- -aCCAcGGGAGUcACcagcacCGCCACGGGGa -3' miRNA: 3'- ggGGU-CCCUCA-UGaac---GCGGUGCCUC- -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 139496 | 0.67 | 0.820971 |
Target: 5'- aCCCgGGGGGGUGCcugGUGUUuaguaGGAGg -3' miRNA: 3'- -GGGgUCCCUCAUGaa-CGCGGug---CCUC- -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 45662 | 0.67 | 0.820971 |
Target: 5'- aUCCAGGGAG-ACcgucucCGCCAgGGAGc -3' miRNA: 3'- gGGGUCCCUCaUGaac---GCGGUgCCUC- -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 108403 | 0.67 | 0.812552 |
Target: 5'- cCCCCAGGGccaGGUGC-UGCuGgCACGaGAa -3' miRNA: 3'- -GGGGUCCC---UCAUGaACG-CgGUGC-CUc -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 123753 | 0.67 | 0.803979 |
Target: 5'- uCCUCAGGGAcagGCUcgUGCGCUACGc-- -3' miRNA: 3'- -GGGGUCCCUca-UGA--ACGCGGUGCcuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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