miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28737 3' -58 NC_006146.1 + 169407 0.66 0.860485
Target:  5'- gCCCCucuccuGGGAGgccACgUGUGgaggcCCGCGGAGa -3'
miRNA:   3'- -GGGGu-----CCCUCa--UGaACGC-----GGUGCCUC- -5'
28737 3' -58 NC_006146.1 + 113645 0.66 0.860485
Target:  5'- gCUCCGGGGGauGgcCUUGCuGaCCACGGGc -3'
miRNA:   3'- -GGGGUCCCU--CauGAACG-C-GGUGCCUc -5'
28737 3' -58 NC_006146.1 + 141701 0.66 0.860485
Target:  5'- aCCCgguGGGGAGacaGCUgagggGgGCCGgGGAGg -3'
miRNA:   3'- gGGG---UCCCUCa--UGAa----CgCGGUgCCUC- -5'
28737 3' -58 NC_006146.1 + 167543 0.66 0.860485
Target:  5'- gCCCCucuccuGGGAGgccACgUGUGgaggcCCGCGGAGa -3'
miRNA:   3'- -GGGGu-----CCCUCa--UGaACGC-----GGUGCCUC- -5'
28737 3' -58 NC_006146.1 + 170690 0.66 0.852948
Target:  5'- gCCCCGGGGAc------CGUCGCGGGGg -3'
miRNA:   3'- -GGGGUCCCUcaugaacGCGGUGCCUC- -5'
28737 3' -58 NC_006146.1 + 54008 0.66 0.852948
Target:  5'- cCCUCAGGGccGGcACcaggugGCGCCucCGGAGg -3'
miRNA:   3'- -GGGGUCCC--UCaUGaa----CGCGGu-GCCUC- -5'
28737 3' -58 NC_006146.1 + 135110 0.66 0.852948
Target:  5'- uUCCCAGGGuuuGggUUUGCuCCGgCGGGGg -3'
miRNA:   3'- -GGGGUCCCu--CauGAACGcGGU-GCCUC- -5'
28737 3' -58 NC_006146.1 + 115233 0.67 0.837313
Target:  5'- aCCCAGGGAGcccaGCUgagagGC-CCAgGGAu -3'
miRNA:   3'- gGGGUCCCUCa---UGAa----CGcGGUgCCUc -5'
28737 3' -58 NC_006146.1 + 123523 0.67 0.837313
Target:  5'- aCCCCAGGcGGGUcGCggGUGgCAaGGAGa -3'
miRNA:   3'- -GGGGUCC-CUCA-UGaaCGCgGUgCCUC- -5'
28737 3' -58 NC_006146.1 + 157738 0.67 0.829227
Target:  5'- -gCCGGGcaggccGGGU-CUUGgGCCugGGAGg -3'
miRNA:   3'- ggGGUCC------CUCAuGAACgCGGugCCUC- -5'
28737 3' -58 NC_006146.1 + 151583 0.67 0.829227
Target:  5'- -gCCGGGcaggccGGGU-CUUGgGCCugGGAGg -3'
miRNA:   3'- ggGGUCC------CUCAuGAACgCGGugCCUC- -5'
28737 3' -58 NC_006146.1 + 148505 0.67 0.829227
Target:  5'- -gCCGGGcaggccGGGU-CUUGgGCCugGGAGg -3'
miRNA:   3'- ggGGUCC------CUCAuGAACgCGGugCCUC- -5'
28737 3' -58 NC_006146.1 + 145427 0.67 0.829227
Target:  5'- -gCCGGGcaggccGGGU-CUUGgGCCugGGAGg -3'
miRNA:   3'- ggGGUCC------CUCAuGAACgCGGugCCUC- -5'
28737 3' -58 NC_006146.1 + 170090 0.67 0.829227
Target:  5'- gCCgGcGGGAGggGCcgGCGCCGCaGGGGg -3'
miRNA:   3'- gGGgU-CCCUCa-UGaaCGCGGUG-CCUC- -5'
28737 3' -58 NC_006146.1 + 142349 0.67 0.829227
Target:  5'- -gCCGGGcaggccGGGU-CUUGgGCCugGGAGg -3'
miRNA:   3'- ggGGUCC------CUCAuGAACgCGGugCCUC- -5'
28737 3' -58 NC_006146.1 + 102521 0.67 0.829227
Target:  5'- -aCCAcGGGAGUcACcagcacCGCCACGGGGa -3'
miRNA:   3'- ggGGU-CCCUCA-UGaac---GCGGUGCCUC- -5'
28737 3' -58 NC_006146.1 + 139496 0.67 0.820971
Target:  5'- aCCCgGGGGGGUGCcugGUGUUuaguaGGAGg -3'
miRNA:   3'- -GGGgUCCCUCAUGaa-CGCGGug---CCUC- -5'
28737 3' -58 NC_006146.1 + 45662 0.67 0.820971
Target:  5'- aUCCAGGGAG-ACcgucucCGCCAgGGAGc -3'
miRNA:   3'- gGGGUCCCUCaUGaac---GCGGUgCCUC- -5'
28737 3' -58 NC_006146.1 + 108403 0.67 0.812552
Target:  5'- cCCCCAGGGccaGGUGC-UGCuGgCACGaGAa -3'
miRNA:   3'- -GGGGUCCC---UCAUGaACG-CgGUGC-CUc -5'
28737 3' -58 NC_006146.1 + 123753 0.67 0.803979
Target:  5'- uCCUCAGGGAcagGCUcgUGCGCUACGc-- -3'
miRNA:   3'- -GGGGUCCCUca-UGA--ACGCGGUGCcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.