miRNA display CGI


Results 1 - 20 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28737 5' -55.4 NC_006146.1 + 162598 1.14 0.001681
Target:  5'- gGCCCUAACAGCACAGAGAGCGACCCCg -3'
miRNA:   3'- -CGGGAUUGUCGUGUCUCUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 47755 0.83 0.196903
Target:  5'- gGCCCUG--GGgACGGAGAGCGGCCUCu -3'
miRNA:   3'- -CGGGAUugUCgUGUCUCUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 69983 0.8 0.289237
Target:  5'- gGCCaagAACAGCACGGucGGgGACCCCa -3'
miRNA:   3'- -CGGga-UUGUCGUGUCucUCgCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 2116 0.8 0.289237
Target:  5'- cGCCU---CGGCACGGAGAGCG-CCCUa -3'
miRNA:   3'- -CGGGauuGUCGUGUCUCUCGCuGGGG- -5'
28737 5' -55.4 NC_006146.1 + 154924 0.77 0.403736
Target:  5'- cGCCCUucGCAGgCGCAGGGAaCGcCCCCa -3'
miRNA:   3'- -CGGGAu-UGUC-GUGUCUCUcGCuGGGG- -5'
28737 5' -55.4 NC_006146.1 + 73034 0.76 0.429835
Target:  5'- gGCCCUcguuccACGGCcCGGGGucGGCGGCCCCc -3'
miRNA:   3'- -CGGGAu-----UGUCGuGUCUC--UCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 46163 0.76 0.438753
Target:  5'- aGCCCcaggAACuccggguggGGC-CAGAGAGCGGCCCg -3'
miRNA:   3'- -CGGGa---UUG---------UCGuGUCUCUCGCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 120859 0.75 0.494352
Target:  5'- gGCCCUGcuaACGGCgAUAGAGuacGgGGCCCCu -3'
miRNA:   3'- -CGGGAU---UGUCG-UGUCUCu--CgCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 110183 0.75 0.503935
Target:  5'- gGCCU---CAGCGCcgguuGGAGAuGCGGCCCCa -3'
miRNA:   3'- -CGGGauuGUCGUG-----UCUCU-CGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 71231 0.75 0.51069
Target:  5'- aGUCCUGGCuggucaacuccuggGGCcugGCGGGGGGCGGCCUCu -3'
miRNA:   3'- -CGGGAUUG--------------UCG---UGUCUCUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 128543 0.75 0.503935
Target:  5'- aCCCUGGCGGCGCGGgagauccuGGAGCGgcaguucgcgGCCUCg -3'
miRNA:   3'- cGGGAUUGUCGUGUC--------UCUCGC----------UGGGG- -5'
28737 5' -55.4 NC_006146.1 + 129331 0.74 0.572965
Target:  5'- cGUCCUcgcGCAGCGCGcGGAGCGGCCg- -3'
miRNA:   3'- -CGGGAu--UGUCGUGUcUCUCGCUGGgg -5'
28737 5' -55.4 NC_006146.1 + 114963 0.74 0.533142
Target:  5'- uGCCCUGGaggaGGCAgAGAGGGCGgggaacGCCUCc -3'
miRNA:   3'- -CGGGAUUg---UCGUgUCUCUCGC------UGGGG- -5'
28737 5' -55.4 NC_006146.1 + 157078 0.74 0.583039
Target:  5'- uGUCCgc-CAGCACcGAGaAGCGGCCCa -3'
miRNA:   3'- -CGGGauuGUCGUGuCUC-UCGCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 77905 0.74 0.543014
Target:  5'- -gCUUAACAgGCGCAGGGgcgGGCGGCCUCg -3'
miRNA:   3'- cgGGAUUGU-CGUGUCUC---UCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 51916 0.74 0.562931
Target:  5'- gGCCUccgaGGCACcGAcGGGCGGCCCCg -3'
miRNA:   3'- -CGGGauugUCGUGuCU-CUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 18971 0.74 0.583039
Target:  5'- gGCCCcuagagagGGCGGCAgGGccGGAGCcaGACCCCa -3'
miRNA:   3'- -CGGGa-------UUGUCGUgUC--UCUCG--CUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 139079 0.74 0.583039
Target:  5'- gGCCCUggUGGCGCGGGGGGCuguaACUCa -3'
miRNA:   3'- -CGGGAuuGUCGUGUCUCUCGc---UGGGg -5'
28737 5' -55.4 NC_006146.1 + 77991 0.73 0.633797
Target:  5'- gGUCCUcucugucugGACAGCACGGGGGGUgguGGCCUa -3'
miRNA:   3'- -CGGGA---------UUGUCGUGUCUCUCG---CUGGGg -5'
28737 5' -55.4 NC_006146.1 + 157535 0.73 0.633797
Target:  5'- gGCCCUG--GGCcCcGAGGGCGGCUCCc -3'
miRNA:   3'- -CGGGAUugUCGuGuCUCUCGCUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.