Results 1 - 20 of 265 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28737 | 5' | -55.4 | NC_006146.1 | + | 170480 | 0.68 | 0.880042 |
Target: 5'- aCCCgAGgGGCgaGCGGGGGGCuuCCCCg -3' miRNA: 3'- cGGGaUUgUCG--UGUCUCUCGcuGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 170401 | 0.66 | 0.93365 |
Target: 5'- cCCCUGGgGGCcucggggGCGGAGGGgGGggUCCCg -3' miRNA: 3'- cGGGAUUgUCG-------UGUCUCUCgCU--GGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 169728 | 0.7 | 0.762953 |
Target: 5'- cGCUCaGAuCGGCGCGGgggagccccGGGGCGGCCCg -3' miRNA: 3'- -CGGGaUU-GUCGUGUC---------UCUCGCUGGGg -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 169549 | 0.68 | 0.880042 |
Target: 5'- aCCCgAGgGGCgaGCGGGGGGCuuCCCCg -3' miRNA: 3'- cGGGaUUgUCG--UGUCUCUCGcuGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 169470 | 0.66 | 0.93365 |
Target: 5'- cCCCUGGgGGCcucggggGCGGAGGGgGGggUCCCg -3' miRNA: 3'- cGGGAUUgUCG-------UGUCUCUCgCU--GGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 168796 | 0.7 | 0.762953 |
Target: 5'- cGCUCaGAuCGGCGCGGgggagccccGGGGCGGCCCg -3' miRNA: 3'- -CGGGaUU-GUCGUGUC---------UCUCGCUGGGg -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 168617 | 0.68 | 0.880042 |
Target: 5'- aCCCgAGgGGCgaGCGGGGGGCuuCCCCg -3' miRNA: 3'- cGGGaUUgUCG--UGUCUCUCGcuGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 168538 | 0.66 | 0.93365 |
Target: 5'- cCCCUGGgGGCcucggggGCGGAGGGgGGggUCCCg -3' miRNA: 3'- cGGGAUUgUCG-------UGUCUCUCgCU--GGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 167864 | 0.7 | 0.762953 |
Target: 5'- cGCUCaGAuCGGCGCGGgggagccccGGGGCGGCCCg -3' miRNA: 3'- -CGGGaUU-GUCGUGUC---------UCUCGCUGGGg -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 167684 | 0.68 | 0.880042 |
Target: 5'- aCCCgAGgGGCgaGCGGGGGGCuuCCCCg -3' miRNA: 3'- cGGGaUUgUCG--UGUCUCUCGcuGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 167606 | 0.66 | 0.93365 |
Target: 5'- cCCCUGGgGGCcucggggGCGGAGGGgGGggUCCCg -3' miRNA: 3'- cGGGAUUgUCG-------UGUCUCUCgCU--GGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 166635 | 0.68 | 0.865533 |
Target: 5'- uCCCUGaucucuGCAGUACcggcgugaucAGGGAGCGGagaauuCCCCg -3' miRNA: 3'- cGGGAU------UGUCGUG----------UCUCUCGCU------GGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 165959 | 0.66 | 0.938986 |
Target: 5'- cCCCUggUccccggGGCACAGAGcacGGCcACCCg -3' miRNA: 3'- cGGGAuuG------UCGUGUCUC---UCGcUGGGg -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 165487 | 0.72 | 0.684512 |
Target: 5'- aGCCCUGAaucCAGCAgGGcaGGAcGCaGCCCCg -3' miRNA: 3'- -CGGGAUU---GUCGUgUC--UCU-CGcUGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 162598 | 1.14 | 0.001681 |
Target: 5'- gGCCCUAACAGCACAGAGAGCGACCCCg -3' miRNA: 3'- -CGGGAUUGUCGUGUCUCUCGCUGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 161423 | 0.7 | 0.79971 |
Target: 5'- uGUCCagUGGCugauGC-CAGAGGGCGcggACCCCg -3' miRNA: 3'- -CGGG--AUUGu---CGuGUCUCUCGC---UGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 159230 | 0.67 | 0.893678 |
Target: 5'- gGCCUacuUGGCcGCAUGGcGAG-GACCCCg -3' miRNA: 3'- -CGGG---AUUGuCGUGUCuCUCgCUGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 158529 | 0.67 | 0.911243 |
Target: 5'- aGCCCgugacucuggagGACGGggaCGCGGAGGGCcugaGGCCCa -3' miRNA: 3'- -CGGGa-----------UUGUC---GUGUCUCUCG----CUGGGg -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 157887 | 0.72 | 0.684512 |
Target: 5'- aCUCUGcCAGCAgAGAcccGGGCGAUCCCc -3' miRNA: 3'- cGGGAUuGUCGUgUCU---CUCGCUGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 157819 | 0.66 | 0.934147 |
Target: 5'- aCCCUGgggucugucuGgGGgACuGAGGGCGGCCgCCu -3' miRNA: 3'- cGGGAU----------UgUCgUGuCUCUCGCUGG-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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