miRNA display CGI


Results 1 - 20 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28737 5' -55.4 NC_006146.1 + 170480 0.68 0.880042
Target:  5'- aCCCgAGgGGCgaGCGGGGGGCuuCCCCg -3'
miRNA:   3'- cGGGaUUgUCG--UGUCUCUCGcuGGGG- -5'
28737 5' -55.4 NC_006146.1 + 170401 0.66 0.93365
Target:  5'- cCCCUGGgGGCcucggggGCGGAGGGgGGggUCCCg -3'
miRNA:   3'- cGGGAUUgUCG-------UGUCUCUCgCU--GGGG- -5'
28737 5' -55.4 NC_006146.1 + 169728 0.7 0.762953
Target:  5'- cGCUCaGAuCGGCGCGGgggagccccGGGGCGGCCCg -3'
miRNA:   3'- -CGGGaUU-GUCGUGUC---------UCUCGCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 169549 0.68 0.880042
Target:  5'- aCCCgAGgGGCgaGCGGGGGGCuuCCCCg -3'
miRNA:   3'- cGGGaUUgUCG--UGUCUCUCGcuGGGG- -5'
28737 5' -55.4 NC_006146.1 + 169470 0.66 0.93365
Target:  5'- cCCCUGGgGGCcucggggGCGGAGGGgGGggUCCCg -3'
miRNA:   3'- cGGGAUUgUCG-------UGUCUCUCgCU--GGGG- -5'
28737 5' -55.4 NC_006146.1 + 168796 0.7 0.762953
Target:  5'- cGCUCaGAuCGGCGCGGgggagccccGGGGCGGCCCg -3'
miRNA:   3'- -CGGGaUU-GUCGUGUC---------UCUCGCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 168617 0.68 0.880042
Target:  5'- aCCCgAGgGGCgaGCGGGGGGCuuCCCCg -3'
miRNA:   3'- cGGGaUUgUCG--UGUCUCUCGcuGGGG- -5'
28737 5' -55.4 NC_006146.1 + 168538 0.66 0.93365
Target:  5'- cCCCUGGgGGCcucggggGCGGAGGGgGGggUCCCg -3'
miRNA:   3'- cGGGAUUgUCG-------UGUCUCUCgCU--GGGG- -5'
28737 5' -55.4 NC_006146.1 + 167864 0.7 0.762953
Target:  5'- cGCUCaGAuCGGCGCGGgggagccccGGGGCGGCCCg -3'
miRNA:   3'- -CGGGaUU-GUCGUGUC---------UCUCGCUGGGg -5'
28737 5' -55.4 NC_006146.1 + 167684 0.68 0.880042
Target:  5'- aCCCgAGgGGCgaGCGGGGGGCuuCCCCg -3'
miRNA:   3'- cGGGaUUgUCG--UGUCUCUCGcuGGGG- -5'
28737 5' -55.4 NC_006146.1 + 167606 0.66 0.93365
Target:  5'- cCCCUGGgGGCcucggggGCGGAGGGgGGggUCCCg -3'
miRNA:   3'- cGGGAUUgUCG-------UGUCUCUCgCU--GGGG- -5'
28737 5' -55.4 NC_006146.1 + 166635 0.68 0.865533
Target:  5'- uCCCUGaucucuGCAGUACcggcgugaucAGGGAGCGGagaauuCCCCg -3'
miRNA:   3'- cGGGAU------UGUCGUG----------UCUCUCGCU------GGGG- -5'
28737 5' -55.4 NC_006146.1 + 165959 0.66 0.938986
Target:  5'- cCCCUggUccccggGGCACAGAGcacGGCcACCCg -3'
miRNA:   3'- cGGGAuuG------UCGUGUCUC---UCGcUGGGg -5'
28737 5' -55.4 NC_006146.1 + 165487 0.72 0.684512
Target:  5'- aGCCCUGAaucCAGCAgGGcaGGAcGCaGCCCCg -3'
miRNA:   3'- -CGGGAUU---GUCGUgUC--UCU-CGcUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 162598 1.14 0.001681
Target:  5'- gGCCCUAACAGCACAGAGAGCGACCCCg -3'
miRNA:   3'- -CGGGAUUGUCGUGUCUCUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 161423 0.7 0.79971
Target:  5'- uGUCCagUGGCugauGC-CAGAGGGCGcggACCCCg -3'
miRNA:   3'- -CGGG--AUUGu---CGuGUCUCUCGC---UGGGG- -5'
28737 5' -55.4 NC_006146.1 + 159230 0.67 0.893678
Target:  5'- gGCCUacuUGGCcGCAUGGcGAG-GACCCCg -3'
miRNA:   3'- -CGGG---AUUGuCGUGUCuCUCgCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 158529 0.67 0.911243
Target:  5'- aGCCCgugacucuggagGACGGggaCGCGGAGGGCcugaGGCCCa -3'
miRNA:   3'- -CGGGa-----------UUGUC---GUGUCUCUCG----CUGGGg -5'
28737 5' -55.4 NC_006146.1 + 157887 0.72 0.684512
Target:  5'- aCUCUGcCAGCAgAGAcccGGGCGAUCCCc -3'
miRNA:   3'- cGGGAUuGUCGUgUCU---CUCGCUGGGG- -5'
28737 5' -55.4 NC_006146.1 + 157819 0.66 0.934147
Target:  5'- aCCCUGgggucugucuGgGGgACuGAGGGCGGCCgCCu -3'
miRNA:   3'- cGGGAU----------UgUCgUGuCUCUCGCUGG-GG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.