Results 41 - 60 of 265 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28737 | 5' | -55.4 | NC_006146.1 | + | 145508 | 0.66 | 0.934147 |
Target: 5'- aCCCUGgggucugucuGgGGgACuGAGGGCGGCCgCCu -3' miRNA: 3'- cGGGAU----------UgUCgUGuCUCUCGCUGG-GG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 142430 | 0.66 | 0.934147 |
Target: 5'- aCCCUGgggucugucuGgGGgACuGAGGGCGGCCgCCu -3' miRNA: 3'- cGGGAU----------UgUCgUGuCUCUCGCUGG-GG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 157819 | 0.66 | 0.934147 |
Target: 5'- aCCCUGgggucugucuGgGGgACuGAGGGCGGCCgCCu -3' miRNA: 3'- cGGGAU----------UgUCgUGuCUCUCGCUGG-GG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 154741 | 0.66 | 0.934147 |
Target: 5'- aCCCUGgggucugucuGgGGgACuGAGGGCGGCCgCCu -3' miRNA: 3'- cGGGAU----------UgUCgUGuCUCUCGCUGG-GG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 75824 | 0.66 | 0.934147 |
Target: 5'- gGCCCUgcggGACAuGCACcaGGGGAGCucugGACCa- -3' miRNA: 3'- -CGGGA----UUGU-CGUG--UCUCUCG----CUGGgg -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 21073 | 0.66 | 0.934147 |
Target: 5'- gGCCCUGGCcGCccacaccaccCGGAGccuguuuGUGGCCCCc -3' miRNA: 3'- -CGGGAUUGuCGu---------GUCUCu------CGCUGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 49182 | 0.66 | 0.934147 |
Target: 5'- uCCCgGAUGGUACGGcGGGUguuGGCCCCc -3' miRNA: 3'- cGGGaUUGUCGUGUCuCUCG---CUGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 59576 | 0.66 | 0.934147 |
Target: 5'- gGCC---ACGGCGCagguggcgaucuGGAGGGCGGcgucCCCCg -3' miRNA: 3'- -CGGgauUGUCGUG------------UCUCUCGCU----GGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 33027 | 0.66 | 0.934147 |
Target: 5'- cCCCUGcCGGCcCGGGGcGgGGCCCg -3' miRNA: 3'- cGGGAUuGUCGuGUCUCuCgCUGGGg -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 114721 | 0.66 | 0.934147 |
Target: 5'- gGCCCUGGCGGC-C-GAGuaucGGCGcauCCUCa -3' miRNA: 3'- -CGGGAUUGUCGuGuCUC----UCGCu--GGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 167606 | 0.66 | 0.93365 |
Target: 5'- cCCCUGGgGGCcucggggGCGGAGGGgGGggUCCCg -3' miRNA: 3'- cGGGAUUgUCG-------UGUCUCUCgCU--GGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 170401 | 0.66 | 0.93365 |
Target: 5'- cCCCUGGgGGCcucggggGCGGAGGGgGGggUCCCg -3' miRNA: 3'- cGGGAUUgUCG-------UGUCUCUCgCU--GGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 168538 | 0.66 | 0.93365 |
Target: 5'- cCCCUGGgGGCcucggggGCGGAGGGgGGggUCCCg -3' miRNA: 3'- cGGGAUUgUCG-------UGUCUCUCgCU--GGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 169470 | 0.66 | 0.93365 |
Target: 5'- cCCCUGGgGGCcucggggGCGGAGGGgGGggUCCCg -3' miRNA: 3'- cGGGAUUgUCG-------UGUCUCUCgCU--GGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 59986 | 0.66 | 0.933151 |
Target: 5'- -aCCUGGgGGuCAUGGAGugcaaggccaacGCGGCCCCg -3' miRNA: 3'- cgGGAUUgUC-GUGUCUCu-----------CGCUGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 40822 | 0.66 | 0.932649 |
Target: 5'- gGCCUUGGCcaugagcuugguaaGGgGCAGGGGGCGcucuuggagGCCCg -3' miRNA: 3'- -CGGGAUUG--------------UCgUGUCUCUCGC---------UGGGg -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 155802 | 0.66 | 0.93113 |
Target: 5'- gGCCCUGGgGGcCACcGAGucaaacaggugagucAGCGgaGCCCCc -3' miRNA: 3'- -CGGGAUUgUC-GUGuCUC---------------UCGC--UGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 57102 | 0.66 | 0.93113 |
Target: 5'- cGUCCUGGcCAGCGgGGAGAggguggaaGUguuuuacaagucuccGACCCCg -3' miRNA: 3'- -CGGGAUU-GUCGUgUCUCU--------CG---------------CUGGGG- -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 4507 | 0.66 | 0.929072 |
Target: 5'- gGCaCUGGCGGgccaGCGGGGGGUGACCa- -3' miRNA: 3'- -CGgGAUUGUCg---UGUCUCUCGCUGGgg -5' |
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28737 | 5' | -55.4 | NC_006146.1 | + | 51568 | 0.66 | 0.929072 |
Target: 5'- aCCCUG--GGCGCcgccGGGAGgGGCCCg -3' miRNA: 3'- cGGGAUugUCGUGu---CUCUCgCUGGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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