Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28738 | 3' | -54 | NC_006146.1 | + | 162918 | 0.66 | 0.964533 |
Target: 5'- cUGGGUAGUAUaUGCUGuCCUaaaGuuGGGa -3' miRNA: 3'- aACCCAUCAUAcAUGAU-GGG---CggCCU- -5' |
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28738 | 3' | -54 | NC_006146.1 | + | 52557 | 0.66 | 0.964533 |
Target: 5'- -aGcGGUAG-AUGUucACgcGCCCGCCGGc -3' miRNA: 3'- aaC-CCAUCaUACA--UGa-UGGGCGGCCu -5' |
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28738 | 3' | -54 | NC_006146.1 | + | 91823 | 0.66 | 0.961076 |
Target: 5'- cUGGGcAGUugugaagaagGUGUGCUGgCCGgUGGAa -3' miRNA: 3'- aACCCaUCA----------UACAUGAUgGGCgGCCU- -5' |
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28738 | 3' | -54 | NC_006146.1 | + | 9335 | 0.67 | 0.944935 |
Target: 5'- -cGGGUAGUAcaUACUACCCaacuaggguuuGCUGGu -3' miRNA: 3'- aaCCCAUCAUacAUGAUGGG-----------CGGCCu -5' |
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28738 | 3' | -54 | NC_006146.1 | + | 10400 | 0.67 | 0.935426 |
Target: 5'- -aGGGUGGUGcUGUGCUACaCGgUGGu -3' miRNA: 3'- aaCCCAUCAU-ACAUGAUGgGCgGCCu -5' |
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28738 | 3' | -54 | NC_006146.1 | + | 163318 | 0.67 | 0.924936 |
Target: 5'- gUGGGUAGUGUaUACUAUCCuaGCUuuGGGu -3' miRNA: 3'- aACCCAUCAUAcAUGAUGGG--CGG--CCU- -5' |
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28738 | 3' | -54 | NC_006146.1 | + | 9739 | 0.67 | 0.924936 |
Target: 5'- -gGGGUAGUAUaUGCUAUCaC-CCGGGc -3' miRNA: 3'- aaCCCAUCAUAcAUGAUGG-GcGGCCU- -5' |
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28738 | 3' | -54 | NC_006146.1 | + | 33398 | 0.67 | 0.924936 |
Target: 5'- -cGGGUGGgggGUG--GCCCGCCuGGGc -3' miRNA: 3'- aaCCCAUCauaCAUgaUGGGCGG-CCU- -5' |
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28738 | 3' | -54 | NC_006146.1 | + | 100719 | 0.67 | 0.919321 |
Target: 5'- -gGGGUgGGUGUGggACcgGCCuCGCCGGc -3' miRNA: 3'- aaCCCA-UCAUACa-UGa-UGG-GCGGCCu -5' |
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28738 | 3' | -54 | NC_006146.1 | + | 163049 | 0.67 | 0.919321 |
Target: 5'- gUUGGGUAGUGUaUACUAUCauaGCUGuGGg -3' miRNA: 3'- -AACCCAUCAUAcAUGAUGGg--CGGC-CU- -5' |
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28738 | 3' | -54 | NC_006146.1 | + | 100840 | 0.68 | 0.900358 |
Target: 5'- gUGGGgaGGUGgc-ACUgaucaagGCCCGCCGGAa -3' miRNA: 3'- aACCCa-UCAUacaUGA-------UGGGCGGCCU- -5' |
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28738 | 3' | -54 | NC_006146.1 | + | 41758 | 0.7 | 0.825084 |
Target: 5'- -cGGGUGG-----GCUuCCCGCCGGAg -3' miRNA: 3'- aaCCCAUCauacaUGAuGGGCGGCCU- -5' |
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28738 | 3' | -54 | NC_006146.1 | + | 137997 | 0.72 | 0.731344 |
Target: 5'- -gGGGUGGgggGUGCgccCCCaGCCGGAc -3' miRNA: 3'- aaCCCAUCauaCAUGau-GGG-CGGCCU- -5' |
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28738 | 3' | -54 | NC_006146.1 | + | 34167 | 0.72 | 0.711226 |
Target: 5'- -aGGGUGGgggGUGCgccCCCaGCCGGAc -3' miRNA: 3'- aaCCCAUCauaCAUGau-GGG-CGGCCU- -5' |
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28738 | 3' | -54 | NC_006146.1 | + | 161571 | 1.07 | 0.006462 |
Target: 5'- gUUGGGUAGUAUGUACUACCCGCCGGAu -3' miRNA: 3'- -AACCCAUCAUACAUGAUGGGCGGCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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