miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28738 3' -54 NC_006146.1 + 162918 0.66 0.964533
Target:  5'- cUGGGUAGUAUaUGCUGuCCUaaaGuuGGGa -3'
miRNA:   3'- aACCCAUCAUAcAUGAU-GGG---CggCCU- -5'
28738 3' -54 NC_006146.1 + 52557 0.66 0.964533
Target:  5'- -aGcGGUAG-AUGUucACgcGCCCGCCGGc -3'
miRNA:   3'- aaC-CCAUCaUACA--UGa-UGGGCGGCCu -5'
28738 3' -54 NC_006146.1 + 91823 0.66 0.961076
Target:  5'- cUGGGcAGUugugaagaagGUGUGCUGgCCGgUGGAa -3'
miRNA:   3'- aACCCaUCA----------UACAUGAUgGGCgGCCU- -5'
28738 3' -54 NC_006146.1 + 9335 0.67 0.944935
Target:  5'- -cGGGUAGUAcaUACUACCCaacuaggguuuGCUGGu -3'
miRNA:   3'- aaCCCAUCAUacAUGAUGGG-----------CGGCCu -5'
28738 3' -54 NC_006146.1 + 10400 0.67 0.935426
Target:  5'- -aGGGUGGUGcUGUGCUACaCGgUGGu -3'
miRNA:   3'- aaCCCAUCAU-ACAUGAUGgGCgGCCu -5'
28738 3' -54 NC_006146.1 + 163318 0.67 0.924936
Target:  5'- gUGGGUAGUGUaUACUAUCCuaGCUuuGGGu -3'
miRNA:   3'- aACCCAUCAUAcAUGAUGGG--CGG--CCU- -5'
28738 3' -54 NC_006146.1 + 9739 0.67 0.924936
Target:  5'- -gGGGUAGUAUaUGCUAUCaC-CCGGGc -3'
miRNA:   3'- aaCCCAUCAUAcAUGAUGG-GcGGCCU- -5'
28738 3' -54 NC_006146.1 + 33398 0.67 0.924936
Target:  5'- -cGGGUGGgggGUG--GCCCGCCuGGGc -3'
miRNA:   3'- aaCCCAUCauaCAUgaUGGGCGG-CCU- -5'
28738 3' -54 NC_006146.1 + 100719 0.67 0.919321
Target:  5'- -gGGGUgGGUGUGggACcgGCCuCGCCGGc -3'
miRNA:   3'- aaCCCA-UCAUACa-UGa-UGG-GCGGCCu -5'
28738 3' -54 NC_006146.1 + 163049 0.67 0.919321
Target:  5'- gUUGGGUAGUGUaUACUAUCauaGCUGuGGg -3'
miRNA:   3'- -AACCCAUCAUAcAUGAUGGg--CGGC-CU- -5'
28738 3' -54 NC_006146.1 + 100840 0.68 0.900358
Target:  5'- gUGGGgaGGUGgc-ACUgaucaagGCCCGCCGGAa -3'
miRNA:   3'- aACCCa-UCAUacaUGA-------UGGGCGGCCU- -5'
28738 3' -54 NC_006146.1 + 41758 0.7 0.825084
Target:  5'- -cGGGUGG-----GCUuCCCGCCGGAg -3'
miRNA:   3'- aaCCCAUCauacaUGAuGGGCGGCCU- -5'
28738 3' -54 NC_006146.1 + 137997 0.72 0.731344
Target:  5'- -gGGGUGGgggGUGCgccCCCaGCCGGAc -3'
miRNA:   3'- aaCCCAUCauaCAUGau-GGG-CGGCCU- -5'
28738 3' -54 NC_006146.1 + 34167 0.72 0.711226
Target:  5'- -aGGGUGGgggGUGCgccCCCaGCCGGAc -3'
miRNA:   3'- aaCCCAUCauaCAUGau-GGG-CGGCCU- -5'
28738 3' -54 NC_006146.1 + 161571 1.07 0.006462
Target:  5'- gUUGGGUAGUAUGUACUACCCGCCGGAu -3'
miRNA:   3'- -AACCCAUCAUACAUGAUGGGCGGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.