Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28738 | 5' | -57 | NC_006146.1 | + | 54037 | 0.66 | 0.88708 |
Target: 5'- cGCCUGGCCGGgcCGG-AUGUGgUGg-- -3' miRNA: 3'- aCGGGCCGGCC--GUCaUACACgAUagg -5' |
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28738 | 5' | -57 | NC_006146.1 | + | 61582 | 0.66 | 0.880184 |
Target: 5'- gGCUCGGCCGuGCAGcag--GCU-UCCc -3' miRNA: 3'- aCGGGCCGGC-CGUCauacaCGAuAGG- -5' |
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28738 | 5' | -57 | NC_006146.1 | + | 58151 | 0.66 | 0.880184 |
Target: 5'- cGCCUGGCCGGCuuc---UGCg--CCu -3' miRNA: 3'- aCGGGCCGGCCGucauacACGauaGG- -5' |
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28738 | 5' | -57 | NC_006146.1 | + | 44770 | 0.66 | 0.891112 |
Target: 5'- gGCCCGGCgGGCGGggaacccagGCcggggAUCUg -3' miRNA: 3'- aCGGGCCGgCCGUCauaca----CGa----UAGG- -5' |
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28738 | 5' | -57 | NC_006146.1 | + | 13843 | 0.66 | 0.880184 |
Target: 5'- aGgCCGGCCggagggaccccGGCGGcccgGUGUGCcagcGUCCc -3' miRNA: 3'- aCgGGCCGG-----------CCGUCa---UACACGa---UAGG- -5' |
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28738 | 5' | -57 | NC_006146.1 | + | 19998 | 0.66 | 0.880184 |
Target: 5'- aGgCCGGCCggagggaccccGGCGGcccgGUGUGCcagcGUCCc -3' miRNA: 3'- aCgGGCCGG-----------CCGUCa---UACACGa---UAGG- -5' |
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28738 | 5' | -57 | NC_006146.1 | + | 23076 | 0.66 | 0.880184 |
Target: 5'- aGgCCGGCCggagggaccccGGCGGcccgGUGUGCcagcGUCCc -3' miRNA: 3'- aCgGGCCGG-----------CCGUCa---UACACGa---UAGG- -5' |
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28738 | 5' | -57 | NC_006146.1 | + | 26154 | 0.66 | 0.880184 |
Target: 5'- aGgCCGGCCggagggaccccGGCGGcccgGUGUGCcagcGUCCc -3' miRNA: 3'- aCgGGCCGG-----------CCGUCa---UACACGa---UAGG- -5' |
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28738 | 5' | -57 | NC_006146.1 | + | 16921 | 0.66 | 0.880184 |
Target: 5'- aGgCCGGCCggagggaccccGGCGGcccgGUGUGCcagcGUCCc -3' miRNA: 3'- aCgGGCCGG-----------CCGUCa---UACACGa---UAGG- -5' |
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28738 | 5' | -57 | NC_006146.1 | + | 29232 | 0.66 | 0.880184 |
Target: 5'- aGgCCGGCCggagggaccccGGCGGcccgGUGUGCcagcGUCCc -3' miRNA: 3'- aCgGGCCGG-----------CCGUCa---UACACGa---UAGG- -5' |
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28738 | 5' | -57 | NC_006146.1 | + | 137595 | 0.66 | 0.865747 |
Target: 5'- aGCUCgGGCCGGgGGccggGUGCcccuggGUCCg -3' miRNA: 3'- aCGGG-CCGGCCgUCaua-CACGa-----UAGG- -5' |
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28738 | 5' | -57 | NC_006146.1 | + | 103842 | 0.66 | 0.873071 |
Target: 5'- gGCCCGuCUGGCAGag-GUGgUcUCCg -3' miRNA: 3'- aCGGGCcGGCCGUCauaCACgAuAGG- -5' |
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28738 | 5' | -57 | NC_006146.1 | + | 64026 | 0.66 | 0.88708 |
Target: 5'- aGgCgGGCCGGCuuGUGcuUGUaCUGUCCc -3' miRNA: 3'- aCgGgCCGGCCGu-CAU--ACAcGAUAGG- -5' |
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28738 | 5' | -57 | NC_006146.1 | + | 157358 | 0.66 | 0.880184 |
Target: 5'- gGCCgGGCgGGCGGggacgggGcUGCUcggGUCCc -3' miRNA: 3'- aCGGgCCGgCCGUCaua----C-ACGA---UAGG- -5' |
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28738 | 5' | -57 | NC_006146.1 | + | 154280 | 0.66 | 0.880184 |
Target: 5'- gGCCgGGCgGGCGGggacgggGcUGCUcggGUCCc -3' miRNA: 3'- aCGGgCCGgCCGUCaua----C-ACGA---UAGG- -5' |
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28738 | 5' | -57 | NC_006146.1 | + | 151202 | 0.66 | 0.880184 |
Target: 5'- gGCCgGGCgGGCGGggacgggGcUGCUcggGUCCc -3' miRNA: 3'- aCGGgCCGgCCGUCaua----C-ACGA---UAGG- -5' |
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28738 | 5' | -57 | NC_006146.1 | + | 148124 | 0.66 | 0.880184 |
Target: 5'- gGCCgGGCgGGCGGggacgggGcUGCUcggGUCCc -3' miRNA: 3'- aCGGgCCGgCCGUCaua----C-ACGA---UAGG- -5' |
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28738 | 5' | -57 | NC_006146.1 | + | 145046 | 0.66 | 0.880184 |
Target: 5'- gGCCgGGCgGGCGGggacgggGcUGCUcggGUCCc -3' miRNA: 3'- aCGGgCCGgCCGUCaua----C-ACGA---UAGG- -5' |
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28738 | 5' | -57 | NC_006146.1 | + | 141968 | 0.66 | 0.880184 |
Target: 5'- gGCCgGGCgGGCGGggacgggGcUGCUcggGUCCc -3' miRNA: 3'- aCGGgCCGgCCGUCaua----C-ACGA---UAGG- -5' |
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28738 | 5' | -57 | NC_006146.1 | + | 77963 | 0.66 | 0.880184 |
Target: 5'- gGCCgGaGCCGGUGGccuuggagGUGCcgGUCCu -3' miRNA: 3'- aCGGgC-CGGCCGUCaua-----CACGa-UAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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