miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28738 5' -57 NC_006146.1 + 150326 0.75 0.422153
Target:  5'- cGCCCgggcgcaGGCCGGCuAGUcUGUGCUccucuUCCg -3'
miRNA:   3'- aCGGG-------CCGGCCG-UCAuACACGAu----AGG- -5'
28738 5' -57 NC_006146.1 + 106674 0.67 0.84256
Target:  5'- cGcCCCGGCCcaggcGCAG-AUGUGCc-UCCu -3'
miRNA:   3'- aC-GGGCCGGc----CGUCaUACACGauAGG- -5'
28738 5' -57 NC_006146.1 + 33542 0.66 0.865747
Target:  5'- gUGCCCGGCUugccuGGCccug-GUGCUccUCCg -3'
miRNA:   3'- -ACGGGCCGG-----CCGucauaCACGAu-AGG- -5'
28738 5' -57 NC_006146.1 + 44770 0.66 0.891112
Target:  5'- gGCCCGGCgGGCGGggaacccagGCcggggAUCUg -3'
miRNA:   3'- aCGGGCCGgCCGUCauaca----CGa----UAGG- -5'
28738 5' -57 NC_006146.1 + 5270 0.69 0.713521
Target:  5'- cGCCCGaGCCGGgGGUAgaaauuaaUGUCCa -3'
miRNA:   3'- aCGGGC-CGGCCgUCAUacacg---AUAGG- -5'
28738 5' -57 NC_006146.1 + 34256 0.69 0.725311
Target:  5'- cGCCgGGCCGGCuGgggguUGUGCaccccCCg -3'
miRNA:   3'- aCGGgCCGGCCGuCau---ACACGaua--GG- -5'
28738 5' -57 NC_006146.1 + 116876 0.69 0.754256
Target:  5'- gGCCCGGCCaGGCGcagcaGUGcCUGcUCCa -3'
miRNA:   3'- aCGGGCCGG-CCGUcaua-CAC-GAU-AGG- -5'
28738 5' -57 NC_006146.1 + 33899 0.68 0.773039
Target:  5'- gUGCCCGGCCuacccccguccuGGagcuccuccgucCGGUggGUGCgGUCCg -3'
miRNA:   3'- -ACGGGCCGG------------CC------------GUCAuaCACGaUAGG- -5'
28738 5' -57 NC_006146.1 + 117915 0.68 0.809057
Target:  5'- gGCCaCGGCCGGCAGguccgccUGCgcacuaCCg -3'
miRNA:   3'- aCGG-GCCGGCCGUCauac---ACGaua---GG- -5'
28738 5' -57 NC_006146.1 + 112101 0.67 0.834448
Target:  5'- uUGCuuGGCuCGGgGGUGgaggugGUGCUGgugguggCCu -3'
miRNA:   3'- -ACGggCCG-GCCgUCAUa-----CACGAUa------GG- -5'
28738 5' -57 NC_006146.1 + 66507 0.67 0.817688
Target:  5'- aUGCaCCGGCCGGC-GUGauacacgccGCUGUCa -3'
miRNA:   3'- -ACG-GGCCGGCCGuCAUaca------CGAUAGg -5'
28738 5' -57 NC_006146.1 + 110586 0.68 0.809057
Target:  5'- cGCCaCGGuCCGGgucaGGUcgGUGggGUCCc -3'
miRNA:   3'- aCGG-GCC-GGCCg---UCAuaCACgaUAGG- -5'
28738 5' -57 NC_006146.1 + 9306 0.74 0.431823
Target:  5'- cUG-CCGGCCgGGCAGcAUuUGCUAUCCg -3'
miRNA:   3'- -ACgGGCCGG-CCGUCaUAcACGAUAGG- -5'
28738 5' -57 NC_006146.1 + 156912 0.67 0.826155
Target:  5'- aGCCCGGCCgaGGCcugGGUGgcgGcGCUGacgggcUCCg -3'
miRNA:   3'- aCGGGCCGG--CCG---UCAUa--CaCGAU------AGG- -5'
28738 5' -57 NC_006146.1 + 50734 0.73 0.5154
Target:  5'- gGCCCGGUCGG-GGUAcGUG-UGUCCg -3'
miRNA:   3'- aCGGGCCGGCCgUCAUaCACgAUAGG- -5'
28738 5' -57 NC_006146.1 + 137881 0.68 0.782251
Target:  5'- cGCCCcgGGCCGGCAGg--Gg---GUCCc -3'
miRNA:   3'- aCGGG--CCGGCCGUCauaCacgaUAGG- -5'
28738 5' -57 NC_006146.1 + 42716 0.67 0.828661
Target:  5'- cGCCCgcucgGGCUGGCAGccgcggauccgggcgGUGCUG-CCg -3'
miRNA:   3'- aCGGG-----CCGGCCGUCaua------------CACGAUaGG- -5'
28738 5' -57 NC_006146.1 + 45913 0.67 0.850485
Target:  5'- cGCCCGGCCGGUgacc-GUGCcGUa- -3'
miRNA:   3'- aCGGGCCGGCCGucauaCACGaUAgg -5'
28738 5' -57 NC_006146.1 + 137989 0.72 0.564579
Target:  5'- gGCCCGGCgGGguGggggGUGCg--CCc -3'
miRNA:   3'- aCGGGCCGgCCguCaua-CACGauaGG- -5'
28738 5' -57 NC_006146.1 + 138086 0.69 0.725311
Target:  5'- cGCCgGGCCGGCuGgggguUGUGCaccccCCg -3'
miRNA:   3'- aCGGgCCGGCCGuCau---ACACGaua--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.