miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28738 5' -57 NC_006146.1 + 154280 0.66 0.880184
Target:  5'- gGCCgGGCgGGCGGggacgggGcUGCUcggGUCCc -3'
miRNA:   3'- aCGGgCCGgCCGUCaua----C-ACGA---UAGG- -5'
28738 5' -57 NC_006146.1 + 103842 0.66 0.873071
Target:  5'- gGCCCGuCUGGCAGag-GUGgUcUCCg -3'
miRNA:   3'- aCGGGCcGGCCGUCauaCACgAuAGG- -5'
28738 5' -57 NC_006146.1 + 137595 0.66 0.865747
Target:  5'- aGCUCgGGCCGGgGGccggGUGCcccuggGUCCg -3'
miRNA:   3'- aCGGG-CCGGCCgUCaua-CACGa-----UAGG- -5'
28738 5' -57 NC_006146.1 + 33542 0.66 0.865747
Target:  5'- gUGCCCGGCUugccuGGCccug-GUGCUccUCCg -3'
miRNA:   3'- -ACGGGCCGG-----CCGucauaCACGAu-AGG- -5'
28738 5' -57 NC_006146.1 + 45913 0.67 0.850485
Target:  5'- cGCCCGGCCGGUgacc-GUGCcGUa- -3'
miRNA:   3'- aCGGGCCGGCCGucauaCACGaUAgg -5'
28738 5' -57 NC_006146.1 + 39836 0.67 0.849702
Target:  5'- gGCCUcggccgcacagugGGCCGGCGGgggcUGUGUGC---CCg -3'
miRNA:   3'- aCGGG-------------CCGGCCGUC----AUACACGauaGG- -5'
28738 5' -57 NC_006146.1 + 106674 0.67 0.84256
Target:  5'- cGcCCCGGCCcaggcGCAG-AUGUGCc-UCCu -3'
miRNA:   3'- aC-GGGCCGGc----CGUCaUACACGauAGG- -5'
28738 5' -57 NC_006146.1 + 132094 0.67 0.84256
Target:  5'- gGCCUGGCU-GCAG-AUGUGCaccCCg -3'
miRNA:   3'- aCGGGCCGGcCGUCaUACACGauaGG- -5'
28738 5' -57 NC_006146.1 + 112101 0.67 0.834448
Target:  5'- uUGCuuGGCuCGGgGGUGgaggugGUGCUGgugguggCCu -3'
miRNA:   3'- -ACGggCCG-GCCgUCAUa-----CACGAUa------GG- -5'
28738 5' -57 NC_006146.1 + 42716 0.67 0.828661
Target:  5'- cGCCCgcucgGGCUGGCAGccgcggauccgggcgGUGCUG-CCg -3'
miRNA:   3'- aCGGG-----CCGGCCGUCaua------------CACGAUaGG- -5'
28738 5' -57 NC_006146.1 + 156912 0.67 0.826155
Target:  5'- aGCCCGGCCgaGGCcugGGUGgcgGcGCUGacgggcUCCg -3'
miRNA:   3'- aCGGGCCGG--CCG---UCAUa--CaCGAU------AGG- -5'
28738 5' -57 NC_006146.1 + 121355 0.67 0.826155
Target:  5'- gGCCUGGCCGGC---GUG-GCc-UCCg -3'
miRNA:   3'- aCGGGCCGGCCGucaUACaCGauAGG- -5'
28738 5' -57 NC_006146.1 + 59899 0.67 0.825316
Target:  5'- gGCCCcguccagaaagaGGuuGGUGGUcgcucggAUGuUGCUAUCCa -3'
miRNA:   3'- aCGGG------------CCggCCGUCA-------UAC-ACGAUAGG- -5'
28738 5' -57 NC_006146.1 + 66507 0.67 0.817688
Target:  5'- aUGCaCCGGCCGGC-GUGauacacgccGCUGUCa -3'
miRNA:   3'- -ACG-GGCCGGCCGuCAUaca------CGAUAGg -5'
28738 5' -57 NC_006146.1 + 62636 0.67 0.817688
Target:  5'- gGCUgGGCuuucCGGCGGccUGccUGCUGUCCg -3'
miRNA:   3'- aCGGgCCG----GCCGUCauAC--ACGAUAGG- -5'
28738 5' -57 NC_006146.1 + 89120 0.67 0.817688
Target:  5'- aGCCCGGUgGGauuGGUAUuGUGCc-UCCc -3'
miRNA:   3'- aCGGGCCGgCCg--UCAUA-CACGauAGG- -5'
28738 5' -57 NC_006146.1 + 132624 0.67 0.817688
Target:  5'- ----gGGCCGGCAGUGUG-GCccgcUCCa -3'
miRNA:   3'- acgggCCGGCCGUCAUACaCGau--AGG- -5'
28738 5' -57 NC_006146.1 + 110586 0.68 0.809057
Target:  5'- cGCCaCGGuCCGGgucaGGUcgGUGggGUCCc -3'
miRNA:   3'- aCGG-GCC-GGCCg---UCAuaCACgaUAGG- -5'
28738 5' -57 NC_006146.1 + 117915 0.68 0.809057
Target:  5'- gGCCaCGGCCGGCAGguccgccUGCgcacuaCCg -3'
miRNA:   3'- aCGG-GCCGGCCGUCauac---ACGaua---GG- -5'
28738 5' -57 NC_006146.1 + 127596 0.68 0.782251
Target:  5'- cGCgCCGGCCGGguGagaGUGaCUAaCCu -3'
miRNA:   3'- aCG-GGCCGGCCguCauaCAC-GAUaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.