Results 1 - 20 of 21 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28739 | 3' | -53.5 | NC_006146.1 | + | 117533 | 0.66 | 0.973417 |
Target: 5'- cGCCUCUCccucgGGGCCUGGgccgcauucaggcugUUCAGGGUa- -3' miRNA: 3'- uUGGAGAG-----UCUGGACU---------------GAGUUCCAgc -5' |
|||||||
28739 | 3' | -53.5 | NC_006146.1 | + | 55669 | 0.66 | 0.972309 |
Target: 5'- gGGCCUCUCAG-CUgGGCUCccuGGGUg- -3' miRNA: 3'- -UUGGAGAGUCuGGaCUGAGu--UCCAgc -5' |
|||||||
28739 | 3' | -53.5 | NC_006146.1 | + | 20844 | 0.66 | 0.972309 |
Target: 5'- uGCCUCUCcaucgccgAGACCgUGACgcugCAGGGgCGc -3' miRNA: 3'- uUGGAGAG--------UCUGG-ACUGa---GUUCCaGC- -5' |
|||||||
28739 | 3' | -53.5 | NC_006146.1 | + | 130479 | 0.66 | 0.969392 |
Target: 5'- gAGCCUCUCuu-CCgGGCUCAccaugauuaacuAGGUCu -3' miRNA: 3'- -UUGGAGAGucuGGaCUGAGU------------UCCAGc -5' |
|||||||
28739 | 3' | -53.5 | NC_006146.1 | + | 59840 | 0.67 | 0.951502 |
Target: 5'- gGugCggCUCAGGCUcccgUGACUCAGGGagGa -3' miRNA: 3'- -UugGa-GAGUCUGG----ACUGAGUUCCagC- -5' |
|||||||
28739 | 3' | -53.5 | NC_006146.1 | + | 116638 | 0.67 | 0.942709 |
Target: 5'- -cCCUCUCGGaggacguuucccGCCUGAC-CGGGGcCGc -3' miRNA: 3'- uuGGAGAGUC------------UGGACUGaGUUCCaGC- -5' |
|||||||
28739 | 3' | -53.5 | NC_006146.1 | + | 165727 | 0.67 | 0.936966 |
Target: 5'- aAACgUCUCGGGCCUGGCcaggaacuucagCAGGG-CGu -3' miRNA: 3'- -UUGgAGAGUCUGGACUGa-----------GUUCCaGC- -5' |
|||||||
28739 | 3' | -53.5 | NC_006146.1 | + | 167097 | 0.68 | 0.93294 |
Target: 5'- uGGCCUgaCcCAGACCUGACUguGGGcCa -3' miRNA: 3'- -UUGGA--GaGUCUGGACUGAguUCCaGc -5' |
|||||||
28739 | 3' | -53.5 | NC_006146.1 | + | 60415 | 0.68 | 0.922183 |
Target: 5'- -cCCUCcUGGACCUGGC-CGGGGUgGa -3' miRNA: 3'- uuGGAGaGUCUGGACUGaGUUCCAgC- -5' |
|||||||
28739 | 3' | -53.5 | NC_006146.1 | + | 45050 | 0.68 | 0.904195 |
Target: 5'- gGGCCUCgCGGGCCUugGGCUUGAugaccGGUCGg -3' miRNA: 3'- -UUGGAGaGUCUGGA--CUGAGUU-----CCAGC- -5' |
|||||||
28739 | 3' | -53.5 | NC_006146.1 | + | 142051 | 0.69 | 0.890989 |
Target: 5'- uGGCCUCUgGGGCCacccgGGCUgcCGGGGUCc -3' miRNA: 3'- -UUGGAGAgUCUGGa----CUGA--GUUCCAGc -5' |
|||||||
28739 | 3' | -53.5 | NC_006146.1 | + | 145129 | 0.69 | 0.890989 |
Target: 5'- uGGCCUCUgGGGCCacccgGGCUgcCGGGGUCc -3' miRNA: 3'- -UUGGAGAgUCUGGa----CUGA--GUUCCAGc -5' |
|||||||
28739 | 3' | -53.5 | NC_006146.1 | + | 148207 | 0.69 | 0.890989 |
Target: 5'- uGGCCUCUgGGGCCacccgGGCUgcCGGGGUCc -3' miRNA: 3'- -UUGGAGAgUCUGGa----CUGA--GUUCCAGc -5' |
|||||||
28739 | 3' | -53.5 | NC_006146.1 | + | 151285 | 0.69 | 0.890989 |
Target: 5'- uGGCCUCUgGGGCCacccgGGCUgcCGGGGUCc -3' miRNA: 3'- -UUGGAGAgUCUGGa----CUGA--GUUCCAGc -5' |
|||||||
28739 | 3' | -53.5 | NC_006146.1 | + | 154363 | 0.69 | 0.890989 |
Target: 5'- uGGCCUCUgGGGCCacccgGGCUgcCGGGGUCc -3' miRNA: 3'- -UUGGAGAgUCUGGa----CUGA--GUUCCAGc -5' |
|||||||
28739 | 3' | -53.5 | NC_006146.1 | + | 117486 | 0.69 | 0.890989 |
Target: 5'- -uCCUCUCGG-CCgagaGACUCGcGGUCa -3' miRNA: 3'- uuGGAGAGUCuGGa---CUGAGUuCCAGc -5' |
|||||||
28739 | 3' | -53.5 | NC_006146.1 | + | 157441 | 0.69 | 0.890989 |
Target: 5'- uGGCCUCUgGGGCCacccgGGCUgcCGGGGUCc -3' miRNA: 3'- -UUGGAGAgUCUGGa----CUGA--GUUCCAGc -5' |
|||||||
28739 | 3' | -53.5 | NC_006146.1 | + | 157495 | 0.69 | 0.869425 |
Target: 5'- gGGCCUUgCAGACCUGGCUgAGGcaGUCc -3' miRNA: 3'- -UUGGAGaGUCUGGACUGAgUUC--CAGc -5' |
|||||||
28739 | 3' | -53.5 | NC_006146.1 | + | 146846 | 0.7 | 0.853937 |
Target: 5'- gAGCC---CGGGCCUGGCUCGGGGcCGc -3' miRNA: 3'- -UUGGagaGUCUGGACUGAGUUCCaGC- -5' |
|||||||
28739 | 3' | -53.5 | NC_006146.1 | + | 9567 | 0.71 | 0.774842 |
Target: 5'- aGACCUCUU-GGCCUGAacagaCAGGGUCa -3' miRNA: 3'- -UUGGAGAGuCUGGACUga---GUUCCAGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home