miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28739 5' -49.6 NC_006146.1 + 161393 1.11 0.008891
Target:  5'- uUGCAACCCUAAGCUGCAGAUCAUAGGc -3'
miRNA:   3'- -ACGUUGGGAUUCGACGUCUAGUAUCC- -5'
28739 5' -49.6 NC_006146.1 + 55259 0.75 0.827719
Target:  5'- gGCGGCCC-GGGCgaaGCGGcUCGUGGGg -3'
miRNA:   3'- aCGUUGGGaUUCGa--CGUCuAGUAUCC- -5'
28739 5' -49.6 NC_006146.1 + 130685 0.72 0.923474
Target:  5'- gUGCAAUCagGGGCgcgagaucuggGCGGAUCAUAGGc -3'
miRNA:   3'- -ACGUUGGgaUUCGa----------CGUCUAGUAUCC- -5'
28739 5' -49.6 NC_006146.1 + 51191 0.72 0.929083
Target:  5'- gGCuGCUCgaggAAGCUGUGGAgCAUGGGa -3'
miRNA:   3'- aCGuUGGGa---UUCGACGUCUaGUAUCC- -5'
28739 5' -49.6 NC_006146.1 + 75695 0.71 0.939512
Target:  5'- cGCcuCCCUggagGAGCUGCAGcgCA-GGGa -3'
miRNA:   3'- aCGuuGGGA----UUCGACGUCuaGUaUCC- -5'
28739 5' -49.6 NC_006146.1 + 159666 0.71 0.939512
Target:  5'- cGgGACCCUaAAGCUGCAGAUgGc--- -3'
miRNA:   3'- aCgUUGGGA-UUCGACGUCUAgUaucc -5'
28739 5' -49.6 NC_006146.1 + 8571 0.7 0.957264
Target:  5'- cUGCAGCCC-GGGCUGCAGcacc-AGGc -3'
miRNA:   3'- -ACGUUGGGaUUCGACGUCuaguaUCC- -5'
28739 5' -49.6 NC_006146.1 + 77300 0.7 0.957264
Target:  5'- aGCAGCCCcagGAGCccgGCGGGUCGc--- -3'
miRNA:   3'- aCGUUGGGa--UUCGa--CGUCUAGUaucc -5'
28739 5' -49.6 NC_006146.1 + 135615 0.7 0.961074
Target:  5'- gGCAACCCcgGGGCUGauCAGGUUAauaAGGa -3'
miRNA:   3'- aCGUUGGGa-UUCGAC--GUCUAGUa--UCC- -5'
28739 5' -49.6 NC_006146.1 + 72506 0.7 0.967651
Target:  5'- cUGCAGCgCCUGcggaggagcggacGGCUGCGGcUCucgGGGa -3'
miRNA:   3'- -ACGUUG-GGAU-------------UCGACGUCuAGua-UCC- -5'
28739 5' -49.6 NC_006146.1 + 100693 0.69 0.973958
Target:  5'- cGCGGCCCUcggcacccGGcGCUGCGGGg-GUGGGu -3'
miRNA:   3'- aCGUUGGGA--------UU-CGACGUCUagUAUCC- -5'
28739 5' -49.6 NC_006146.1 + 32169 0.69 0.973958
Target:  5'- gGCAACCgUAAGgaGgGGGggGUAGGg -3'
miRNA:   3'- aCGUUGGgAUUCgaCgUCUagUAUCC- -5'
28739 5' -49.6 NC_006146.1 + 156516 0.69 0.976625
Target:  5'- cGCGGCCCggagggGAGCgggagGCgAGAUCccGGGa -3'
miRNA:   3'- aCGUUGGGa-----UUCGa----CG-UCUAGuaUCC- -5'
28739 5' -49.6 NC_006146.1 + 162230 0.69 0.978126
Target:  5'- gUGCGAUCCUGgacAGCUGCGGuuuuaacAUCAcaagccuguuuuccUGGGg -3'
miRNA:   3'- -ACGUUGGGAU---UCGACGUC-------UAGU--------------AUCC- -5'
28739 5' -49.6 NC_006146.1 + 12790 0.69 0.979086
Target:  5'- cGCGGCCCUGcAGggGCGGA-CGUAcGGa -3'
miRNA:   3'- aCGUUGGGAU-UCgaCGUCUaGUAU-CC- -5'
28739 5' -49.6 NC_006146.1 + 88571 0.69 0.981349
Target:  5'- cGUAACCCggauaugGAGCUGguGGgggC-UGGGg -3'
miRNA:   3'- aCGUUGGGa------UUCGACguCUa--GuAUCC- -5'
28739 5' -49.6 NC_006146.1 + 114977 0.68 0.985319
Target:  5'- aGCAGCCCacGGCcGCGGAcaUCA-AGGc -3'
miRNA:   3'- aCGUUGGGauUCGaCGUCU--AGUaUCC- -5'
28739 5' -49.6 NC_006146.1 + 161740 0.68 0.987045
Target:  5'- uUGUAGCCCggggguggcGGCUG-AGGUCcgAGGg -3'
miRNA:   3'- -ACGUUGGGau-------UCGACgUCUAGuaUCC- -5'
28739 5' -49.6 NC_006146.1 + 14350 0.68 0.987045
Target:  5'- uUGCGGCCCUGcuGGUgggGuCGGGUCccGGGa -3'
miRNA:   3'- -ACGUUGGGAU--UCGa--C-GUCUAGuaUCC- -5'
28739 5' -49.6 NC_006146.1 + 108683 0.68 0.988609
Target:  5'- cUGC-GCCCagAGGCUGCGGcgCA-GGGc -3'
miRNA:   3'- -ACGuUGGGa-UUCGACGUCuaGUaUCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.