miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28739 5' -49.6 NC_006146.1 + 8571 0.7 0.957264
Target:  5'- cUGCAGCCC-GGGCUGCAGcacc-AGGc -3'
miRNA:   3'- -ACGUUGGGaUUCGACGUCuaguaUCC- -5'
28739 5' -49.6 NC_006146.1 + 9652 0.66 0.998256
Target:  5'- aUGCGGCaCagguAGCUGCc-GUCGUGGGa -3'
miRNA:   3'- -ACGUUG-Ggau-UCGACGucUAGUAUCC- -5'
28739 5' -49.6 NC_006146.1 + 12790 0.69 0.979086
Target:  5'- cGCGGCCCUGcAGggGCGGA-CGUAcGGa -3'
miRNA:   3'- aCGUUGGGAU-UCgaCGUCUaGUAU-CC- -5'
28739 5' -49.6 NC_006146.1 + 14350 0.68 0.987045
Target:  5'- uUGCGGCCCUGcuGGUgggGuCGGGUCccGGGa -3'
miRNA:   3'- -ACGUUGGGAU--UCGa--C-GUCUAGuaUCC- -5'
28739 5' -49.6 NC_006146.1 + 16192 0.66 0.997907
Target:  5'- gGCcGCCCUGgugGGCUGCA--UC-UGGGc -3'
miRNA:   3'- aCGuUGGGAU---UCGACGUcuAGuAUCC- -5'
28739 5' -49.6 NC_006146.1 + 32169 0.69 0.973958
Target:  5'- gGCAACCgUAAGgaGgGGGggGUAGGg -3'
miRNA:   3'- aCGUUGGgAUUCgaCgUCUagUAUCC- -5'
28739 5' -49.6 NC_006146.1 + 38385 0.67 0.995163
Target:  5'- cGUAGuCUCUGuGgUGCGGAUgCAUGGGg -3'
miRNA:   3'- aCGUU-GGGAUuCgACGUCUA-GUAUCC- -5'
28739 5' -49.6 NC_006146.1 + 49481 0.66 0.9975
Target:  5'- cGgGGCCCUGA--UGUuGGUCAUGGGc -3'
miRNA:   3'- aCgUUGGGAUUcgACGuCUAGUAUCC- -5'
28739 5' -49.6 NC_006146.1 + 51191 0.72 0.929083
Target:  5'- gGCuGCUCgaggAAGCUGUGGAgCAUGGGa -3'
miRNA:   3'- aCGuUGGGa---UUCGACGUCUaGUAUCC- -5'
28739 5' -49.6 NC_006146.1 + 52810 0.67 0.994361
Target:  5'- aGCuccuGACCUUccugggugaagAGGCUGacaacCAGAUCAUGGGg -3'
miRNA:   3'- aCG----UUGGGA-----------UUCGAC-----GUCUAGUAUCC- -5'
28739 5' -49.6 NC_006146.1 + 54861 0.68 0.988609
Target:  5'- gGCGGCCgggaaaaaUGGGCUGCGGG-CGUAGcGg -3'
miRNA:   3'- aCGUUGGg-------AUUCGACGUCUaGUAUC-C- -5'
28739 5' -49.6 NC_006146.1 + 55259 0.75 0.827719
Target:  5'- gGCGGCCC-GGGCgaaGCGGcUCGUGGGg -3'
miRNA:   3'- aCGUUGGGaUUCGa--CGUCuAGUAUCC- -5'
28739 5' -49.6 NC_006146.1 + 60876 0.66 0.9975
Target:  5'- aUGCAGCCC----CUGCAGAcCGgccUGGGg -3'
miRNA:   3'- -ACGUUGGGauucGACGUCUaGU---AUCC- -5'
28739 5' -49.6 NC_006146.1 + 66685 0.66 0.998256
Target:  5'- gGCAccucccugaACCCUcGGCuUGCGGcccCGUGGGg -3'
miRNA:   3'- aCGU---------UGGGAuUCG-ACGUCua-GUAUCC- -5'
28739 5' -49.6 NC_006146.1 + 72506 0.7 0.967651
Target:  5'- cUGCAGCgCCUGcggaggagcggacGGCUGCGGcUCucgGGGa -3'
miRNA:   3'- -ACGUUG-GGAU-------------UCGACGUCuAGua-UCC- -5'
28739 5' -49.6 NC_006146.1 + 75695 0.71 0.939512
Target:  5'- cGCcuCCCUggagGAGCUGCAGcgCA-GGGa -3'
miRNA:   3'- aCGuuGGGA----UUCGACGUCuaGUaUCC- -5'
28739 5' -49.6 NC_006146.1 + 77300 0.7 0.957264
Target:  5'- aGCAGCCCcagGAGCccgGCGGGUCGc--- -3'
miRNA:   3'- aCGUUGGGa--UUCGa--CGUCUAGUaucc -5'
28739 5' -49.6 NC_006146.1 + 77638 0.66 0.997907
Target:  5'- gGCAACCCcgcGAGCgGCuacAUCGUGGa -3'
miRNA:   3'- aCGUUGGGa--UUCGaCGuc-UAGUAUCc -5'
28739 5' -49.6 NC_006146.1 + 88571 0.69 0.981349
Target:  5'- cGUAACCCggauaugGAGCUGguGGgggC-UGGGg -3'
miRNA:   3'- aCGUUGGGa------UUCGACguCUa--GuAUCC- -5'
28739 5' -49.6 NC_006146.1 + 98709 0.66 0.998256
Target:  5'- aGCAGCCagUAGGCUGCgAGAgaAUGGc -3'
miRNA:   3'- aCGUUGGg-AUUCGACG-UCUagUAUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.