miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28739 5' -49.6 NC_006146.1 + 55259 0.75 0.827719
Target:  5'- gGCGGCCC-GGGCgaaGCGGcUCGUGGGg -3'
miRNA:   3'- aCGUUGGGaUUCGa--CGUCuAGUAUCC- -5'
28739 5' -49.6 NC_006146.1 + 142556 0.67 0.995869
Target:  5'- gUGCAG-CCUAGGCUagGCGGAgccugCGUGcGGa -3'
miRNA:   3'- -ACGUUgGGAUUCGA--CGUCUa----GUAU-CC- -5'
28739 5' -49.6 NC_006146.1 + 114164 0.67 0.992437
Target:  5'- aUGCuGGCCCUGGGCaGCAGgGUCAc--- -3'
miRNA:   3'- -ACG-UUGGGAUUCGaCGUC-UAGUaucc -5'
28739 5' -49.6 NC_006146.1 + 102569 0.68 0.990023
Target:  5'- aGCAGCagguCCgagccGAGCgUGCAGGUCGgGGGg -3'
miRNA:   3'- aCGUUG----GGa----UUCG-ACGUCUAGUaUCC- -5'
28739 5' -49.6 NC_006146.1 + 129366 0.68 0.988609
Target:  5'- aGCAGCCUcaggagGAGCccGCGGAUCccGGGc -3'
miRNA:   3'- aCGUUGGGa-----UUCGa-CGUCUAGuaUCC- -5'
28739 5' -49.6 NC_006146.1 + 162230 0.69 0.978126
Target:  5'- gUGCGAUCCUGgacAGCUGCGGuuuuaacAUCAcaagccuguuuuccUGGGg -3'
miRNA:   3'- -ACGUUGGGAU---UCGACGUC-------UAGU--------------AUCC- -5'
28739 5' -49.6 NC_006146.1 + 117355 0.66 0.998256
Target:  5'- aUGCAGCUCcAAGCgcaGgAGGUCAUAauuGGa -3'
miRNA:   3'- -ACGUUGGGaUUCGa--CgUCUAGUAU---CC- -5'
28739 5' -49.6 NC_006146.1 + 105785 0.66 0.996489
Target:  5'- aUGUGGCUCgcGGCgUGUAGAUCgcaGUAGGc -3'
miRNA:   3'- -ACGUUGGGauUCG-ACGUCUAG---UAUCC- -5'
28739 5' -49.6 NC_006146.1 + 38385 0.67 0.995163
Target:  5'- cGUAGuCUCUGuGgUGCGGAUgCAUGGGg -3'
miRNA:   3'- aCGUU-GGGAUuCgACGUCUA-GUAUCC- -5'
28739 5' -49.6 NC_006146.1 + 54861 0.68 0.988609
Target:  5'- gGCGGCCgggaaaaaUGGGCUGCGGG-CGUAGcGg -3'
miRNA:   3'- aCGUUGGg-------AUUCGACGUCUaGUAUC-C- -5'
28739 5' -49.6 NC_006146.1 + 51191 0.72 0.929083
Target:  5'- gGCuGCUCgaggAAGCUGUGGAgCAUGGGa -3'
miRNA:   3'- aCGuUGGGa---UUCGACGUCUaGUAUCC- -5'
28739 5' -49.6 NC_006146.1 + 60876 0.66 0.9975
Target:  5'- aUGCAGCCC----CUGCAGAcCGgccUGGGg -3'
miRNA:   3'- -ACGUUGGGauucGACGUCUaGU---AUCC- -5'
28739 5' -49.6 NC_006146.1 + 159666 0.71 0.939512
Target:  5'- cGgGACCCUaAAGCUGCAGAUgGc--- -3'
miRNA:   3'- aCgUUGGGA-UUCGACGUCUAgUaucc -5'
28739 5' -49.6 NC_006146.1 + 162339 0.67 0.994361
Target:  5'- cUGCAGCCC-GGGCUGCAGc-UAUGa- -3'
miRNA:   3'- -ACGUUGGGaUUCGACGUCuaGUAUcc -5'
28739 5' -49.6 NC_006146.1 + 146228 0.66 0.997907
Target:  5'- gGCGGCCau-GGCUGCAGuUCuuccacGGGu -3'
miRNA:   3'- aCGUUGGgauUCGACGUCuAGua----UCC- -5'
28739 5' -49.6 NC_006146.1 + 156516 0.69 0.976625
Target:  5'- cGCGGCCCggagggGAGCgggagGCgAGAUCccGGGa -3'
miRNA:   3'- aCGUUGGGa-----UUCGa----CG-UCUAGuaUCC- -5'
28739 5' -49.6 NC_006146.1 + 160517 0.66 0.996489
Target:  5'- aGCAccACCCUGAGCcGCGaccaguaGUCGUAGu -3'
miRNA:   3'- aCGU--UGGGAUUCGaCGUc------UAGUAUCc -5'
28739 5' -49.6 NC_006146.1 + 88571 0.69 0.981349
Target:  5'- cGUAACCCggauaugGAGCUGguGGgggC-UGGGg -3'
miRNA:   3'- aCGUUGGGa------UUCGACguCUa--GuAUCC- -5'
28739 5' -49.6 NC_006146.1 + 12790 0.69 0.979086
Target:  5'- cGCGGCCCUGcAGggGCGGA-CGUAcGGa -3'
miRNA:   3'- aCGUUGGGAU-UCgaCGUCUaGUAU-CC- -5'
28739 5' -49.6 NC_006146.1 + 114977 0.68 0.985319
Target:  5'- aGCAGCCCacGGCcGCGGAcaUCA-AGGc -3'
miRNA:   3'- aCGUUGGGauUCGaCGUCU--AGUaUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.