miRNA display CGI


Results 1 - 20 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28740 5' -64.9 NC_006146.1 + 215 0.68 0.451818
Target:  5'- cCCCCgcgaCGgUCCCCGGGgCgccccuGGCCu -3'
miRNA:   3'- -GGGGag--GUgAGGGGCCCgGau----CCGGc -5'
28740 5' -64.9 NC_006146.1 + 499 0.8 0.075213
Target:  5'- cCCCCUCCGC-CCCCGaGGCCcccaggggAGGCCc -3'
miRNA:   3'- -GGGGAGGUGaGGGGC-CCGGa-------UCCGGc -5'
28740 5' -64.9 NC_006146.1 + 547 0.69 0.379049
Target:  5'- gCCUCUCCGCgggccUCCacaCGuGGCCUcccaggagagGGGCCGg -3'
miRNA:   3'- -GGGGAGGUG-----AGGg--GC-CCGGA----------UCCGGC- -5'
28740 5' -64.9 NC_006146.1 + 823 0.66 0.538018
Target:  5'- gCCCCUCCcgccggccauccccACgcgcggCCCCGGGCCcuccCCGa -3'
miRNA:   3'- -GGGGAGG--------------UGa-----GGGGCCCGGauccGGC- -5'
28740 5' -64.9 NC_006146.1 + 1145 0.73 0.216134
Target:  5'- gCCC-CCGCgagggUCCCCGGGCCgccccgGGGCUc -3'
miRNA:   3'- gGGGaGGUG-----AGGGGCCCGGa-----UCCGGc -5'
28740 5' -64.9 NC_006146.1 + 1430 0.8 0.075213
Target:  5'- cCCCCUCCGC-CCCCGaGGCCcccaggggAGGCCc -3'
miRNA:   3'- -GGGGAGGUGaGGGGC-CCGGa-------UCCGGc -5'
28740 5' -64.9 NC_006146.1 + 1478 0.69 0.379049
Target:  5'- gCCUCUCCGCgggccUCCacaCGuGGCCUcccaggagagGGGCCGg -3'
miRNA:   3'- -GGGGAGGUG-----AGGg--GC-CCGGA----------UCCGGC- -5'
28740 5' -64.9 NC_006146.1 + 1755 0.66 0.538018
Target:  5'- gCCCCUCCcgccggccauccccACgcgcggCCCCGGGCCcuccCCGa -3'
miRNA:   3'- -GGGGAGG--------------UGa-----GGGGCCCGGauccGGC- -5'
28740 5' -64.9 NC_006146.1 + 2077 0.73 0.216134
Target:  5'- gCCC-CCGCgagggUCCCCGGGCCgccccgGGGCUc -3'
miRNA:   3'- gGGGaGGUG-----AGGGGCCCGGa-----UCCGGc -5'
28740 5' -64.9 NC_006146.1 + 2362 0.8 0.075213
Target:  5'- cCCCCUCCGC-CCCCGaGGCCcccaggggAGGCCc -3'
miRNA:   3'- -GGGGAGGUGaGGGGC-CCGGa-------UCCGGc -5'
28740 5' -64.9 NC_006146.1 + 2410 0.69 0.379049
Target:  5'- gCCUCUCCGCgggccUCCacaCGuGGCCUcccaggagagGGGCCGg -3'
miRNA:   3'- -GGGGAGGUG-----AGGg--GC-CCGGA----------UCCGGC- -5'
28740 5' -64.9 NC_006146.1 + 2687 0.66 0.538018
Target:  5'- gCCCCUCCcgccggccauccccACgcgcggCCCCGGGCCcuccCCGa -3'
miRNA:   3'- -GGGGAGG--------------UGa-----GGGGCCCGGauccGGC- -5'
28740 5' -64.9 NC_006146.1 + 3009 0.73 0.216134
Target:  5'- gCCC-CCGCgagggUCCCCGGGCCgccccgGGGCUc -3'
miRNA:   3'- gGGGaGGUG-----AGGGGCCCGGa-----UCCGGc -5'
28740 5' -64.9 NC_006146.1 + 3294 0.8 0.075213
Target:  5'- cCCCCUCCGC-CCCCGaGGCCcccaggggAGGCCc -3'
miRNA:   3'- -GGGGAGGUGaGGGGC-CCGGa-------UCCGGc -5'
28740 5' -64.9 NC_006146.1 + 3342 0.69 0.379049
Target:  5'- gCCUCUCCGCgggccUCCacaCGuGGCCUcccaggagagGGGCCGg -3'
miRNA:   3'- -GGGGAGGUG-----AGGg--GC-CCGGA----------UCCGGC- -5'
28740 5' -64.9 NC_006146.1 + 3619 0.66 0.538018
Target:  5'- gCCCCUCCcgccggccauccccACgcgcggCCCCGGGCCcuccCCGa -3'
miRNA:   3'- -GGGGAGG--------------UGa-----GGGGCCCGGauccGGC- -5'
28740 5' -64.9 NC_006146.1 + 4034 0.71 0.307935
Target:  5'- gCCCUCCGCUCCCCccucccGCC-GGGCUu -3'
miRNA:   3'- gGGGAGGUGAGGGGcc----CGGaUCCGGc -5'
28740 5' -64.9 NC_006146.1 + 4205 0.68 0.451818
Target:  5'- cCCCCUCCcauugccccguCUCCCCccuGCC-AGGCCa -3'
miRNA:   3'- -GGGGAGGu----------GAGGGGcc-CGGaUCCGGc -5'
28740 5' -64.9 NC_006146.1 + 4376 0.66 0.568682
Target:  5'- gCCCCgcggGCUCCCCaGGCCgacGCCa -3'
miRNA:   3'- -GGGGagg-UGAGGGGcCCGGaucCGGc -5'
28740 5' -64.9 NC_006146.1 + 4564 0.68 0.43498
Target:  5'- cCCCCagCUAUUCaccgagcaCCCGGGCCUgguuuuugAGGUCGa -3'
miRNA:   3'- -GGGGa-GGUGAG--------GGGCCCGGA--------UCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.