miRNA display CGI


Results 41 - 60 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28740 5' -64.9 NC_006146.1 + 19966 0.72 0.276387
Target:  5'- cCCCCUCagcuuguCUCCCCaccGGGUCcaucAGGCCGg -3'
miRNA:   3'- -GGGGAGgu-----GAGGGG---CCCGGa---UCCGGC- -5'
28740 5' -64.9 NC_006146.1 + 129841 0.74 0.183929
Target:  5'- cUCCCUCCA--CCCCGaGGCCcccaGGGCCGc -3'
miRNA:   3'- -GGGGAGGUgaGGGGC-CCGGa---UCCGGC- -5'
28740 5' -64.9 NC_006146.1 + 18499 0.77 0.122822
Target:  5'- uCCCCU-CGC-CCCUGGGCCUcAGGCCc -3'
miRNA:   3'- -GGGGAgGUGaGGGGCCCGGA-UCCGGc -5'
28740 5' -64.9 NC_006146.1 + 16889 0.72 0.276387
Target:  5'- cCCCCUCagcuuguCUCCCCaccGGGUCcaucAGGCCGg -3'
miRNA:   3'- -GGGGAGgu-----GAGGGG---CCCGGa---UCCGGC- -5'
28740 5' -64.9 NC_006146.1 + 15421 0.77 0.122822
Target:  5'- uCCCCU-CGC-CCCUGGGCCUcAGGCCc -3'
miRNA:   3'- -GGGGAgGUGaGGGGCCCGGA-UCCGGc -5'
28740 5' -64.9 NC_006146.1 + 136409 0.71 0.305967
Target:  5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3'
miRNA:   3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5'
28740 5' -64.9 NC_006146.1 + 24655 0.77 0.122822
Target:  5'- uCCCCU-CGC-CCCUGGGCCUcAGGCCc -3'
miRNA:   3'- -GGGGAgGUGaGGGGCCCGGA-UCCGGc -5'
28740 5' -64.9 NC_006146.1 + 136130 0.71 0.305967
Target:  5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3'
miRNA:   3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5'
28740 5' -64.9 NC_006146.1 + 135851 0.71 0.305967
Target:  5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3'
miRNA:   3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5'
28740 5' -64.9 NC_006146.1 + 135387 0.71 0.305967
Target:  5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3'
miRNA:   3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5'
28740 5' -64.9 NC_006146.1 + 63348 0.71 0.301411
Target:  5'- uUCUUCCACgaagCCCUGGGaccCCUGGGCaCGa -3'
miRNA:   3'- gGGGAGGUGa---GGGGCCC---GGAUCCG-GC- -5'
28740 5' -64.9 NC_006146.1 + 119317 0.71 0.282483
Target:  5'- gCCCCUCUgGCUcCCCCGGGCCccucccGGCgGc -3'
miRNA:   3'- -GGGGAGG-UGA-GGGGCCCGGau----CCGgC- -5'
28740 5' -64.9 NC_006146.1 + 26122 0.72 0.276387
Target:  5'- cCCCCUCagcuuguCUCCCCaccGGGUCcaucAGGCCGg -3'
miRNA:   3'- -GGGGAGgu-----GAGGGG---CCCGGa---UCCGGC- -5'
28740 5' -64.9 NC_006146.1 + 46388 0.72 0.258727
Target:  5'- cCCCCgUCC-CUCgCCaGGGCCgagaccAGGCCGa -3'
miRNA:   3'- -GGGG-AGGuGAGgGG-CCCGGa-----UCCGGC- -5'
28740 5' -64.9 NC_006146.1 + 19835 0.73 0.234508
Target:  5'- cCCCCUCCACcccagucccccccCCCCGcuuucGGCCUcucggguccaccAGGCCGg -3'
miRNA:   3'- -GGGGAGGUGa------------GGGGC-----CCGGA------------UCCGGC- -5'
28740 5' -64.9 NC_006146.1 + 156056 0.73 0.221111
Target:  5'- cCCCCUCgGCcUCCCGcGGCCccGGGCCc -3'
miRNA:   3'- -GGGGAGgUGaGGGGC-CCGGa-UCCGGc -5'
28740 5' -64.9 NC_006146.1 + 55881 0.74 0.199007
Target:  5'- cCCCCUCCccuGCUCCCCGcuccaccagcuccacGGCCauGGCCu -3'
miRNA:   3'- -GGGGAGG---UGAGGGGC---------------CCGGauCCGGc -5'
28740 5' -64.9 NC_006146.1 + 29319 0.75 0.167491
Target:  5'- cCCCCUCCucucuccCUCCCCGaGGCCccGGCUc -3'
miRNA:   3'- -GGGGAGGu------GAGGGGC-CCGGauCCGGc -5'
28740 5' -64.9 NC_006146.1 + 20085 0.75 0.167491
Target:  5'- cCCCCUCCucucuccCUCCCCGaGGCCccGGCUc -3'
miRNA:   3'- -GGGGAGGu------GAGGGGC-CCGGauCCGGc -5'
28740 5' -64.9 NC_006146.1 + 137702 0.76 0.152381
Target:  5'- cCCCCUCCGgcCUCCCCccggGGuGCCcGGGCCu -3'
miRNA:   3'- -GGGGAGGU--GAGGGG----CC-CGGaUCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.