miRNA display CGI


Results 61 - 80 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28740 5' -64.9 NC_006146.1 + 115101 0.67 0.522441
Target:  5'- cCUCUUCCACcgCCCCGaGUCgcuGGCCa -3'
miRNA:   3'- -GGGGAGGUGa-GGGGCcCGGau-CCGGc -5'
28740 5' -64.9 NC_006146.1 + 163784 0.67 0.522441
Target:  5'- aUCCUCUaguuaguauGCagCCUGGGCCUuggcGGGCCa -3'
miRNA:   3'- gGGGAGG---------UGagGGGCCCGGA----UCCGGc -5'
28740 5' -64.9 NC_006146.1 + 81213 0.67 0.522441
Target:  5'- aUCCCaggCCGUUCCCCGGGCCccuuccGUCGg -3'
miRNA:   3'- -GGGGa--GGUGAGGGGCCCGGauc---CGGC- -5'
28740 5' -64.9 NC_006146.1 + 27597 0.67 0.52153
Target:  5'- gCCUUCCaagacagACUCUCCGGGUCcacuggguGGCCa -3'
miRNA:   3'- gGGGAGG-------UGAGGGGCCCGGau------CCGGc -5'
28740 5' -64.9 NC_006146.1 + 18843 0.67 0.51336
Target:  5'- -gCUUCCAgaCCCCGGGCgCU--GCCGg -3'
miRNA:   3'- ggGGAGGUgaGGGGCCCG-GAucCGGC- -5'
28740 5' -64.9 NC_006146.1 + 123643 0.67 0.51336
Target:  5'- -aCCUCguCa-CCCGGGCCagGGGCCa -3'
miRNA:   3'- ggGGAGguGagGGGCCCGGa-UCCGGc -5'
28740 5' -64.9 NC_006146.1 + 101280 0.67 0.51336
Target:  5'- gCCC-CCAgUaCCCCGGGgaCgUGGGCCu -3'
miRNA:   3'- gGGGaGGUgA-GGGGCCC--GgAUCCGGc -5'
28740 5' -64.9 NC_006146.1 + 14197 0.67 0.51336
Target:  5'- cCCCCUuuGC-CCCCuGGC--AGGCCa -3'
miRNA:   3'- -GGGGAggUGaGGGGcCCGgaUCCGGc -5'
28740 5' -64.9 NC_006146.1 + 23431 0.67 0.51336
Target:  5'- cCCCCUuuGC-CCCCuGGC--AGGCCa -3'
miRNA:   3'- -GGGGAggUGaGGGGcCCGgaUCCGGc -5'
28740 5' -64.9 NC_006146.1 + 17275 0.67 0.51336
Target:  5'- cCCCCUuuGC-CCCCuGGC--AGGCCa -3'
miRNA:   3'- -GGGGAggUGaGGGGcCCGgaUCCGGc -5'
28740 5' -64.9 NC_006146.1 + 26509 0.67 0.51336
Target:  5'- cCCCCUuuGC-CCCCuGGC--AGGCCa -3'
miRNA:   3'- -GGGGAggUGaGGGGcCCGgaUCCGGc -5'
28740 5' -64.9 NC_006146.1 + 20353 0.67 0.51336
Target:  5'- cCCCCUuuGC-CCCCuGGC--AGGCCa -3'
miRNA:   3'- -GGGGAggUGaGGGGcCCGgaUCCGGc -5'
28740 5' -64.9 NC_006146.1 + 29587 0.67 0.51336
Target:  5'- cCCCCUuuGC-CCCCuGGC--AGGCCa -3'
miRNA:   3'- -GGGGAggUGaGGGGcCCGgaUCCGGc -5'
28740 5' -64.9 NC_006146.1 + 135341 0.67 0.510648
Target:  5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3'
miRNA:   3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5'
28740 5' -64.9 NC_006146.1 + 136363 0.67 0.510648
Target:  5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3'
miRNA:   3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5'
28740 5' -64.9 NC_006146.1 + 136549 0.67 0.510648
Target:  5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3'
miRNA:   3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5'
28740 5' -64.9 NC_006146.1 + 137013 0.67 0.510648
Target:  5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3'
miRNA:   3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5'
28740 5' -64.9 NC_006146.1 + 136456 0.67 0.510648
Target:  5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3'
miRNA:   3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5'
28740 5' -64.9 NC_006146.1 + 135620 0.67 0.510648
Target:  5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3'
miRNA:   3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5'
28740 5' -64.9 NC_006146.1 + 136270 0.67 0.510648
Target:  5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3'
miRNA:   3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.