Results 61 - 80 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28741 | 3' | -56.9 | NC_006146.1 | + | 110865 | 0.7 | 0.649007 |
Target: 5'- gAGGGaCGCUgcgucucggGCUCGGGcGCAGGCggggACg -3' miRNA: 3'- -UCCC-GUGGa--------UGAGCUC-CGUCCGaa--UG- -5' |
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28741 | 3' | -56.9 | NC_006146.1 | + | 111342 | 0.67 | 0.83906 |
Target: 5'- uGGGCGCa-ACcCGAGGUGGGCa--- -3' miRNA: 3'- uCCCGUGgaUGaGCUCCGUCCGaaug -5' |
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28741 | 3' | -56.9 | NC_006146.1 | + | 114606 | 0.67 | 0.830785 |
Target: 5'- uGGGcCACC---UCGAGGCGGcGCUggACg -3' miRNA: 3'- uCCC-GUGGaugAGCUCCGUC-CGAa-UG- -5' |
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28741 | 3' | -56.9 | NC_006146.1 | + | 115577 | 0.68 | 0.786859 |
Target: 5'- -cGGC-CCUACUCGAGaGCcugucAGGCUUcGCc -3' miRNA: 3'- ucCCGuGGAUGAGCUC-CG-----UCCGAA-UG- -5' |
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28741 | 3' | -56.9 | NC_006146.1 | + | 122146 | 0.67 | 0.82233 |
Target: 5'- -cGGCGgCUGCUgGAGGCcGGGCg--- -3' miRNA: 3'- ucCCGUgGAUGAgCUCCG-UCCGaaug -5' |
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28741 | 3' | -56.9 | NC_006146.1 | + | 123707 | 0.7 | 0.638774 |
Target: 5'- cAGGG-GCCUggcGCUCGGGGCGgcGGCggGCu -3' miRNA: 3'- -UCCCgUGGA---UGAGCUCCGU--CCGaaUG- -5' |
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28741 | 3' | -56.9 | NC_006146.1 | + | 137828 | 0.74 | 0.441214 |
Target: 5'- cGGuGCACCUggaaggcagggggGCUCGGGGUGGGUggGCg -3' miRNA: 3'- uCC-CGUGGA-------------UGAGCUCCGUCCGaaUG- -5' |
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28741 | 3' | -56.9 | NC_006146.1 | + | 139168 | 0.72 | 0.567429 |
Target: 5'- gGGGGCGCCUG--UGAGGC-GGCUg-- -3' miRNA: 3'- -UCCCGUGGAUgaGCUCCGuCCGAaug -5' |
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28741 | 3' | -56.9 | NC_006146.1 | + | 141345 | 1.1 | 0.001887 |
Target: 5'- gAGGGCACCUACUCGAGGCAGGCUUACa -3' miRNA: 3'- -UCCCGUGGAUGAGCUCCGUCCGAAUG- -5' |
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28741 | 3' | -56.9 | NC_006146.1 | + | 141612 | 0.66 | 0.884525 |
Target: 5'- cGGGCGCCcuugcCUgGAGGCAGaGaCUggGCg -3' miRNA: 3'- uCCCGUGGau---GAgCUCCGUC-C-GAa-UG- -5' |
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28741 | 3' | -56.9 | NC_006146.1 | + | 144423 | 1.1 | 0.001887 |
Target: 5'- gAGGGCACCUACUCGAGGCAGGCUUACa -3' miRNA: 3'- -UCCCGUGGAUGAGCUCCGUCCGAAUG- -5' |
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28741 | 3' | -56.9 | NC_006146.1 | + | 144690 | 0.66 | 0.884525 |
Target: 5'- cGGGCGCCcuugcCUgGAGGCgagacuGGGCggcUGCg -3' miRNA: 3'- uCCCGUGGau---GAgCUCCG------UCCGa--AUG- -5' |
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28741 | 3' | -56.9 | NC_006146.1 | + | 147501 | 1.1 | 0.001887 |
Target: 5'- gAGGGCACCUACUCGAGGCAGGCUUACa -3' miRNA: 3'- -UCCCGUGGAUGAGCUCCGUCCGAAUG- -5' |
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28741 | 3' | -56.9 | NC_006146.1 | + | 147767 | 0.66 | 0.884525 |
Target: 5'- cGGGCGCCcuugcCUgGAGGCAGaGaCUggGCg -3' miRNA: 3'- uCCCGUGGau---GAgCUCCGUC-C-GAa-UG- -5' |
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28741 | 3' | -56.9 | NC_006146.1 | + | 150579 | 1.1 | 0.001887 |
Target: 5'- gAGGGCACCUACUCGAGGCAGGCUUACa -3' miRNA: 3'- -UCCCGUGGAUGAGCUCCGUCCGAAUG- -5' |
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28741 | 3' | -56.9 | NC_006146.1 | + | 150845 | 0.66 | 0.884525 |
Target: 5'- cGGGCGCCcuugcCUgGAGGCAGaGaCUggGCg -3' miRNA: 3'- uCCCGUGGau---GAgCUCCGUC-C-GAa-UG- -5' |
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28741 | 3' | -56.9 | NC_006146.1 | + | 151710 | 0.68 | 0.786859 |
Target: 5'- gAGGcGCGCCUGCguaGAaGUAGGCcUGCu -3' miRNA: 3'- -UCC-CGUGGAUGag-CUcCGUCCGaAUG- -5' |
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28741 | 3' | -56.9 | NC_006146.1 | + | 153657 | 1.1 | 0.001887 |
Target: 5'- gAGGGCACCUACUCGAGGCAGGCUUACa -3' miRNA: 3'- -UCCCGUGGAUGAGCUCCGUCCGAAUG- -5' |
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28741 | 3' | -56.9 | NC_006146.1 | + | 153923 | 0.66 | 0.884525 |
Target: 5'- cGGGCGCCcuugcCUgGAGGCAGaGaCUggGCg -3' miRNA: 3'- uCCCGUGGau---GAgCUCCGUC-C-GAa-UG- -5' |
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28741 | 3' | -56.9 | NC_006146.1 | + | 156734 | 1.1 | 0.001887 |
Target: 5'- gAGGGCACCUACUCGAGGCAGGCUUACa -3' miRNA: 3'- -UCCCGUGGAUGAGCUCCGUCCGAAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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