miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28741 3' -56.9 NC_006146.1 + 157001 0.66 0.884525
Target:  5'- cGGGCGCCcuugcCUgGAGGCAGaGaCUggGCg -3'
miRNA:   3'- uCCCGUGGau---GAgCUCCGUC-C-GAa-UG- -5'
28741 3' -56.9 NC_006146.1 + 77894 0.66 0.855038
Target:  5'- cGGaGCACgCUGCUUaacaggcgcaGGGGCGGGCg--- -3'
miRNA:   3'- uCC-CGUG-GAUGAG----------CUCCGUCCGaaug -5'
28741 3' -56.9 NC_006146.1 + 15046 0.66 0.854258
Target:  5'- cAGGGCccgccggGCCUGCgagGAGGCAcuGGCggggGCu -3'
miRNA:   3'- -UCCCG-------UGGAUGag-CUCCGU--CCGaa--UG- -5'
28741 3' -56.9 NC_006146.1 + 78950 0.66 0.862727
Target:  5'- -aGGCuCCUAaaaGGGGCAGGCcUGCc -3'
miRNA:   3'- ucCCGuGGAUgagCUCCGUCCGaAUG- -5'
28741 3' -56.9 NC_006146.1 + 58107 0.66 0.847147
Target:  5'- uGGGGCGCa-ACggGAGGCAGGagaGCg -3'
miRNA:   3'- -UCCCGUGgaUGagCUCCGUCCgaaUG- -5'
28741 3' -56.9 NC_006146.1 + 167309 0.66 0.847147
Target:  5'- -cGGCGCCUGCagggGGGGCcGGCgggGCg -3'
miRNA:   3'- ucCCGUGGAUGag--CUCCGuCCGaa-UG- -5'
28741 3' -56.9 NC_006146.1 + 168241 0.66 0.847147
Target:  5'- -cGGCGCCUGCagggGGGGCcGGCgggGCg -3'
miRNA:   3'- ucCCGUGGAUGag--CUCCGuCCGaa-UG- -5'
28741 3' -56.9 NC_006146.1 + 51738 0.66 0.884525
Target:  5'- aGGcGGCGCCc---CGAGGUGGGCUucuugUGCg -3'
miRNA:   3'- -UC-CCGUGGaugaGCUCCGUCCGA-----AUG- -5'
28741 3' -56.9 NC_006146.1 + 169173 0.66 0.847147
Target:  5'- -cGGCGCCUGCagggGGGGCcGGCgggGCg -3'
miRNA:   3'- ucCCGUGGAUGag--CUCCGuCCGaa-UG- -5'
28741 3' -56.9 NC_006146.1 + 61227 0.66 0.862727
Target:  5'- cGGGUACCggACUgCGAGGU-GGUcUGCu -3'
miRNA:   3'- uCCCGUGGa-UGA-GCUCCGuCCGaAUG- -5'
28741 3' -56.9 NC_006146.1 + 162649 0.66 0.862727
Target:  5'- gGGGGUgcauGCCccCUCGuAGGCAGuGCUUcACg -3'
miRNA:   3'- -UCCCG----UGGauGAGC-UCCGUC-CGAA-UG- -5'
28741 3' -56.9 NC_006146.1 + 153923 0.66 0.884525
Target:  5'- cGGGCGCCcuugcCUgGAGGCAGaGaCUggGCg -3'
miRNA:   3'- uCCCGUGGau---GAgCUCCGUC-C-GAa-UG- -5'
28741 3' -56.9 NC_006146.1 + 150845 0.66 0.884525
Target:  5'- cGGGCGCCcuugcCUgGAGGCAGaGaCUggGCg -3'
miRNA:   3'- uCCCGUGGau---GAgCUCCGUC-C-GAa-UG- -5'
28741 3' -56.9 NC_006146.1 + 147767 0.66 0.884525
Target:  5'- cGGGCGCCcuugcCUgGAGGCAGaGaCUggGCg -3'
miRNA:   3'- uCCCGUGGau---GAgCUCCGUC-C-GAa-UG- -5'
28741 3' -56.9 NC_006146.1 + 144690 0.66 0.884525
Target:  5'- cGGGCGCCcuugcCUgGAGGCgagacuGGGCggcUGCg -3'
miRNA:   3'- uCCCGUGGau---GAgCUCCG------UCCGa--AUG- -5'
28741 3' -56.9 NC_006146.1 + 141612 0.66 0.884525
Target:  5'- cGGGCGCCcuugcCUgGAGGCAGaGaCUggGCg -3'
miRNA:   3'- uCCCGUGGau---GAgCUCCGUC-C-GAa-UG- -5'
28741 3' -56.9 NC_006146.1 + 19763 0.66 0.881732
Target:  5'- uGGGCACCUGCgaagacauagagGGGGUugAGGUcUACg -3'
miRNA:   3'- uCCCGUGGAUGag----------CUCCG--UCCGaAUG- -5'
28741 3' -56.9 NC_006146.1 + 57274 0.66 0.877476
Target:  5'- gGGGGCGagacaacauCCaGCgcCGGGGCAGGCg--- -3'
miRNA:   3'- -UCCCGU---------GGaUGa-GCUCCGUCCGaaug -5'
28741 3' -56.9 NC_006146.1 + 92341 0.66 0.877476
Target:  5'- uGGGGCAgCUGauaUGGGGC-GGCUcGCa -3'
miRNA:   3'- -UCCCGUgGAUga-GCUCCGuCCGAaUG- -5'
28741 3' -56.9 NC_006146.1 + 30367 0.66 0.847147
Target:  5'- uGGGGUGCCguccCUCccaGGGCuAGGUUUGCu -3'
miRNA:   3'- -UCCCGUGGau--GAGc--UCCG-UCCGAAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.