miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28741 3' -56.9 NC_006146.1 + 3981 0.67 0.83906
Target:  5'- gAGGGCACCaaguggccaUGgUCGAGGCGcugaugaacgcGGCcuUUGCc -3'
miRNA:   3'- -UCCCGUGG---------AUgAGCUCCGU-----------CCG--AAUG- -5'
28741 3' -56.9 NC_006146.1 + 111342 0.67 0.83906
Target:  5'- uGGGCGCa-ACcCGAGGUGGGCa--- -3'
miRNA:   3'- uCCCGUGgaUGaGCUCCGUCCGaaug -5'
28741 3' -56.9 NC_006146.1 + 40025 0.67 0.830785
Target:  5'- cAGGGgGCCUGCUgGGGGCcguaGCcgACu -3'
miRNA:   3'- -UCCCgUGGAUGAgCUCCGuc--CGaaUG- -5'
28741 3' -56.9 NC_006146.1 + 114606 0.67 0.830785
Target:  5'- uGGGcCACC---UCGAGGCGGcGCUggACg -3'
miRNA:   3'- uCCC-GUGGaugAGCUCCGUC-CGAa-UG- -5'
28741 3' -56.9 NC_006146.1 + 42831 0.67 0.830785
Target:  5'- --cGCACCUGCaUGAGGCcgguGGuCUUGCg -3'
miRNA:   3'- uccCGUGGAUGaGCUCCGu---CC-GAAUG- -5'
28741 3' -56.9 NC_006146.1 + 50178 0.67 0.830785
Target:  5'- gGGGGCGuuUgcACUUGcGGCGGGCUc-- -3'
miRNA:   3'- -UCCCGUggA--UGAGCuCCGUCCGAaug -5'
28741 3' -56.9 NC_006146.1 + 122146 0.67 0.82233
Target:  5'- -cGGCGgCUGCUgGAGGCcGGGCg--- -3'
miRNA:   3'- ucCCGUgGAUGAgCUCCG-UCCGaaug -5'
28741 3' -56.9 NC_006146.1 + 92072 0.67 0.804907
Target:  5'- uGGGGCugCUGCUgGgGGGC-GGCccgGCc -3'
miRNA:   3'- -UCCCGugGAUGAgC-UCCGuCCGaa-UG- -5'
28741 3' -56.9 NC_006146.1 + 90649 0.68 0.795957
Target:  5'- gGGaGGCGCCgcggCGAGGguGGCa--- -3'
miRNA:   3'- -UC-CCGUGGaugaGCUCCguCCGaaug -5'
28741 3' -56.9 NC_006146.1 + 51816 0.68 0.795957
Target:  5'- gAGGGCgGCCUcCUCgggaagcgccgGAGGUGGGC-UGCg -3'
miRNA:   3'- -UCCCG-UGGAuGAG-----------CUCCGUCCGaAUG- -5'
28741 3' -56.9 NC_006146.1 + 75808 0.68 0.795957
Target:  5'- cGGGCGCCgccUUCGAGGCccugcGGGaCaUGCa -3'
miRNA:   3'- uCCCGUGGau-GAGCUCCG-----UCC-GaAUG- -5'
28741 3' -56.9 NC_006146.1 + 92253 0.68 0.795957
Target:  5'- -uGGCugCUGCUgGGGGgCGGGCccgGCc -3'
miRNA:   3'- ucCCGugGAUGAgCUCC-GUCCGaa-UG- -5'
28741 3' -56.9 NC_006146.1 + 151710 0.68 0.786859
Target:  5'- gAGGcGCGCCUGCguaGAaGUAGGCcUGCu -3'
miRNA:   3'- -UCC-CGUGGAUGag-CUcCGUCCGaAUG- -5'
28741 3' -56.9 NC_006146.1 + 115577 0.68 0.786859
Target:  5'- -cGGC-CCUACUCGAGaGCcugucAGGCUUcGCc -3'
miRNA:   3'- ucCCGuGGAUGAGCUC-CG-----UCCGAA-UG- -5'
28741 3' -56.9 NC_006146.1 + 60599 0.68 0.784102
Target:  5'- cAGGGCggcgaugaacGCCUACgcCGAGGCcaucauggcagacgGGGCUcUGCa -3'
miRNA:   3'- -UCCCG----------UGGAUGa-GCUCCG--------------UCCGA-AUG- -5'
28741 3' -56.9 NC_006146.1 + 15926 0.68 0.777621
Target:  5'- cGGGC-CCUGCgCGAGGCcGuGCUgACc -3'
miRNA:   3'- uCCCGuGGAUGaGCUCCGuC-CGAaUG- -5'
28741 3' -56.9 NC_006146.1 + 86577 0.68 0.768254
Target:  5'- aGGGGCAgCUggGCUUGAGGggcagcUGGGCUUGa -3'
miRNA:   3'- -UCCCGUgGA--UGAGCUCC------GUCCGAAUg -5'
28741 3' -56.9 NC_006146.1 + 86543 0.68 0.768254
Target:  5'- aGGGGCAgCUggGCUUGAGGggcagcUGGGCUUGa -3'
miRNA:   3'- -UCCCGUgGA--UGAGCUCC------GUCCGAAUg -5'
28741 3' -56.9 NC_006146.1 + 48625 0.68 0.768254
Target:  5'- cGGGUGCCg--UgGGGGCGGGCUccggGCg -3'
miRNA:   3'- uCCCGUGGaugAgCUCCGUCCGAa---UG- -5'
28741 3' -56.9 NC_006146.1 + 86509 0.68 0.768254
Target:  5'- aGGGGCAgCUggGCUUGAGGggcaacUGGGCUUGa -3'
miRNA:   3'- -UCCCGUgGA--UGAGCUCC------GUCCGAAUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.