miRNA display CGI


Results 101 - 120 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28741 5' -59.9 NC_006146.1 + 33967 0.7 0.512959
Target:  5'- gGGUGGGCguGGUCCGcuGGGUcCGCUg -3'
miRNA:   3'- aCCAUUCGguCCGGGCu-CCCA-GUGGa -5'
28741 5' -59.9 NC_006146.1 + 57224 0.71 0.439661
Target:  5'- cGG-AGGCCGGGCCCGGGcccgaGcCACCUc -3'
miRNA:   3'- aCCaUUCGGUCCGGGCUCc----CaGUGGA- -5'
28741 5' -59.9 NC_006146.1 + 166265 0.71 0.457446
Target:  5'- gGGUAuauGUUcuGGGCCCGcAGGGUCugCa -3'
miRNA:   3'- aCCAUu--CGG--UCCGGGC-UCCCAGugGa -5'
28741 5' -59.9 NC_006146.1 + 33547 0.71 0.439661
Target:  5'- cGGcuuGCCuGGCCCuggugcuccuccGGGGGUCGCCg -3'
miRNA:   3'- aCCauuCGGuCCGGG------------CUCCCAGUGGa -5'
28741 5' -59.9 NC_006146.1 + 46905 0.71 0.457446
Target:  5'- aGcGUAGGCCGGGUUgaGGGGGUCGCa- -3'
miRNA:   3'- aC-CAUUCGGUCCGGg-CUCCCAGUGga -5'
28741 5' -59.9 NC_006146.1 + 41402 0.71 0.475608
Target:  5'- aGGUGGGCCugauguccGCCUGGGGGgCACCc -3'
miRNA:   3'- aCCAUUCGGuc------CGGGCUCCCaGUGGa -5'
28741 5' -59.9 NC_006146.1 + 56583 0.71 0.475608
Target:  5'- gGGgcGGCCGGGCgCCGAGcccgccgccGGUCuCCUc -3'
miRNA:   3'- aCCauUCGGUCCG-GGCUC---------CCAGuGGA- -5'
28741 5' -59.9 NC_006146.1 + 155552 0.71 0.484823
Target:  5'- aGGgcguugGAGCCGGGCUCGcgcGGGG-CGCCc -3'
miRNA:   3'- aCCa-----UUCGGUCCGGGC---UCCCaGUGGa -5'
28741 5' -59.9 NC_006146.1 + 86544 0.71 0.484823
Target:  5'- gGGgcAGCUGGGCuuGAGGGgCAgCUg -3'
miRNA:   3'- aCCauUCGGUCCGggCUCCCaGUgGA- -5'
28741 5' -59.9 NC_006146.1 + 33187 0.71 0.484823
Target:  5'- gGGUAGGcCCGGGCacccCCGGGGGgagGCCg -3'
miRNA:   3'- aCCAUUC-GGUCCG----GGCUCCCag-UGGa -5'
28741 5' -59.9 NC_006146.1 + 86612 0.71 0.484823
Target:  5'- gGGgcAGCUGGGCuuGAGGGgCAgCUg -3'
miRNA:   3'- aCCauUCGGUCCGggCUCCCaGUgGA- -5'
28741 5' -59.9 NC_006146.1 + 86578 0.71 0.484823
Target:  5'- gGGgcAGCUGGGCuuGAGGGgCAgCUg -3'
miRNA:   3'- aCCauUCGGUCCGggCUCCCaGUgGA- -5'
28741 5' -59.9 NC_006146.1 + 116097 0.72 0.388786
Target:  5'- aUGGUGgcGGCCA--CCCGAGGGUCcCCg -3'
miRNA:   3'- -ACCAU--UCGGUccGGGCUCCCAGuGGa -5'
28741 5' -59.9 NC_006146.1 + 137201 0.72 0.422278
Target:  5'- gGGUAGGCCGGGCacaccCCGGGGaGgaaGCCg -3'
miRNA:   3'- aCCAUUCGGUCCG-----GGCUCC-Cag-UGGa -5'
28741 5' -59.9 NC_006146.1 + 143030 0.72 0.431788
Target:  5'- aUGGggAAGCCggaguccagagGGGCCCGAGGGccugaaaggccccggCGCCUg -3'
miRNA:   3'- -ACCa-UUCGG-----------UCCGGGCUCCCa--------------GUGGA- -5'
28741 5' -59.9 NC_006146.1 + 146108 0.72 0.431788
Target:  5'- aUGGggAAGCCggaguccagagGGGCCCGAGGGccugaaaggccccggCGCCUg -3'
miRNA:   3'- -ACCa-UUCGG-----------UCCGGGCUCCCa--------------GUGGA- -5'
28741 5' -59.9 NC_006146.1 + 152264 0.72 0.431788
Target:  5'- aUGGggAAGCCggaguccagagGGGCCCGAGGGccugaaaggccccggCGCCUg -3'
miRNA:   3'- -ACCa-UUCGG-----------UCCGGGCUCCCa--------------GUGGA- -5'
28741 5' -59.9 NC_006146.1 + 155342 0.72 0.431788
Target:  5'- aUGGggAAGCCggaguccagagGGGCCCGAGGGccugaaaggccccggCGCCUg -3'
miRNA:   3'- -ACCa-UUCGG-----------UCCGGGCUCCCa--------------GUGGA- -5'
28741 5' -59.9 NC_006146.1 + 24049 0.72 0.411203
Target:  5'- gGGUgacgcggccccGAGCCAGGCCCGGGcucuacgcuggcgcGGccUCGCCUg -3'
miRNA:   3'- aCCA-----------UUCGGUCCGGGCUC--------------CC--AGUGGA- -5'
28741 5' -59.9 NC_006146.1 + 149186 0.72 0.431788
Target:  5'- aUGGggAAGCCggaguccagagGGGCCCGAGGGccugaaaggccccggCGCCUg -3'
miRNA:   3'- -ACCa-UUCGG-----------UCCGGGCUCCCa--------------GUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.