miRNA display CGI


Results 61 - 80 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28741 5' -59.9 NC_006146.1 + 53115 0.68 0.660451
Target:  5'- aGGc-GGCCcGGCCCGGGGGagCGCg- -3'
miRNA:   3'- aCCauUCGGuCCGGGCUCCCa-GUGga -5'
28741 5' -59.9 NC_006146.1 + 114817 0.68 0.610654
Target:  5'- cUGGU-GGCCGacaccuacuuGGCCCGGuGGGaCGCCUu -3'
miRNA:   3'- -ACCAuUCGGU----------CCGGGCU-CCCaGUGGA- -5'
28741 5' -59.9 NC_006146.1 + 22115 0.68 0.649509
Target:  5'- gGGcAGGCCGGGUCUcgggucuGGGGGUCugUg -3'
miRNA:   3'- aCCaUUCGGUCCGGG-------CUCCCAGugGa -5'
28741 5' -59.9 NC_006146.1 + 88337 0.68 0.617623
Target:  5'- aUGG-AGGCCguuGGGCCCaGGGGGUUaaaggaggcccauaACCUg -3'
miRNA:   3'- -ACCaUUCGG---UCCGGG-CUCCCAG--------------UGGA- -5'
28741 5' -59.9 NC_006146.1 + 112511 0.68 0.620612
Target:  5'- cGGUccagGGGCCgguggaGGGCCU--GGGUCACCUc -3'
miRNA:   3'- aCCA----UUCGG------UCCGGGcuCCCAGUGGA- -5'
28741 5' -59.9 NC_006146.1 + 116395 0.68 0.620612
Target:  5'- aGGaggGAGCgGGGCCCuGGGGaGUCuCCUc -3'
miRNA:   3'- aCCa--UUCGgUCCGGG-CUCC-CAGuGGA- -5'
28741 5' -59.9 NC_006146.1 + 169977 0.68 0.640544
Target:  5'- cGGgaGGCCGGcgcgcGCCCG-GGGUC-CCg -3'
miRNA:   3'- aCCauUCGGUC-----CGGGCuCCCAGuGGa -5'
28741 5' -59.9 NC_006146.1 + 145439 0.67 0.690129
Target:  5'- gGGUcuuGGGCCugggAGGUCCGGGGuGUUgaGCCUg -3'
miRNA:   3'- aCCA---UUCGG----UCCGGGCUCC-CAG--UGGA- -5'
28741 5' -59.9 NC_006146.1 + 142361 0.67 0.690129
Target:  5'- gGGUcuuGGGCCugggAGGUCCGGGGuGUUgaGCCUg -3'
miRNA:   3'- aCCA---UUCGG----UCCGGGCUCC-CAG--UGGA- -5'
28741 5' -59.9 NC_006146.1 + 104222 0.67 0.719396
Target:  5'- cGGggAAGCUGGGCUUccGGGUCAUCa -3'
miRNA:   3'- aCCa-UUCGGUCCGGGcuCCCAGUGGa -5'
28741 5' -59.9 NC_006146.1 + 86454 0.67 0.670376
Target:  5'- gGGgcAGCUGGGCuUUGAGGGggcaGCCUg -3'
miRNA:   3'- aCCauUCGGUCCG-GGCUCCCag--UGGA- -5'
28741 5' -59.9 NC_006146.1 + 148517 0.67 0.690129
Target:  5'- gGGUcuuGGGCCugggAGGUCCGGGGuGUUgaGCCUg -3'
miRNA:   3'- aCCA---UUCGG----UCCGGGCUCC-CAG--UGGA- -5'
28741 5' -59.9 NC_006146.1 + 151595 0.67 0.690129
Target:  5'- gGGUcuuGGGCCugggAGGUCCGGGGuGUUgaGCCUg -3'
miRNA:   3'- aCCA---UUCGG----UCCGGGCUCC-CAG--UGGA- -5'
28741 5' -59.9 NC_006146.1 + 157750 0.67 0.690129
Target:  5'- gGGUcuuGGGCCugggAGGUCCGGGGuGUUgaGCCUg -3'
miRNA:   3'- aCCA---UUCGG----UCCGGGCUCC-CAG--UGGA- -5'
28741 5' -59.9 NC_006146.1 + 59839 0.67 0.703852
Target:  5'- cGGUGcGGCuCAGGCUCccgugacucagggagGAGGuGUCGCCa -3'
miRNA:   3'- aCCAU-UCG-GUCCGGG---------------CUCC-CAGUGGa -5'
28741 5' -59.9 NC_006146.1 + 14811 0.67 0.7097
Target:  5'- aGGccGGCCGGGCCgGAGGaGggCACg- -3'
miRNA:   3'- aCCauUCGGUCCGGgCUCC-Ca-GUGga -5'
28741 5' -59.9 NC_006146.1 + 42381 0.67 0.7097
Target:  5'- gGGUGGGCgAGgggcGCCCcAGGGcCACCc -3'
miRNA:   3'- aCCAUUCGgUC----CGGGcUCCCaGUGGa -5'
28741 5' -59.9 NC_006146.1 + 92087 0.67 0.690129
Target:  5'- gGGgcGGCCcGGCCUGGGGcugCugCUg -3'
miRNA:   3'- aCCauUCGGuCCGGGCUCCca-GugGA- -5'
28741 5' -59.9 NC_006146.1 + 128876 0.67 0.713586
Target:  5'- gGcGUGAGcCCGGGCCCaGAGGGaguagcucggcaacgUCACg- -3'
miRNA:   3'- aC-CAUUC-GGUCCGGG-CUCCC---------------AGUGga -5'
28741 5' -59.9 NC_006146.1 + 41099 0.67 0.723254
Target:  5'- aGGgGAGCCAGGCgUGcagggccuccacuuuAGGGUC-CCg -3'
miRNA:   3'- aCCaUUCGGUCCGgGC---------------UCCCAGuGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.