miRNA display CGI


Results 81 - 100 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28741 5' -59.9 NC_006146.1 + 167299 0.67 0.7097
Target:  5'- cGGgagGGGCCGGcGCCUGcAGGGgggGCCg -3'
miRNA:   3'- aCCa--UUCGGUC-CGGGC-UCCCag-UGGa -5'
28741 5' -59.9 NC_006146.1 + 168231 0.67 0.7097
Target:  5'- cGGgagGGGCCGGcGCCUGcAGGGgggGCCg -3'
miRNA:   3'- aCCa--UUCGGUC-CGGGC-UCCCag-UGGa -5'
28741 5' -59.9 NC_006146.1 + 170673 0.67 0.7097
Target:  5'- cGGgggAGGCCAGGggcgcCCCGGGGaccGUCGCg- -3'
miRNA:   3'- aCCa--UUCGGUCC-----GGGCUCC---CAGUGga -5'
28741 5' -59.9 NC_006146.1 + 42381 0.67 0.7097
Target:  5'- gGGUGGGCgAGgggcGCCCcAGGGcCACCc -3'
miRNA:   3'- aCCAUUCGgUC----CGGGcUCCCaGUGGa -5'
28741 5' -59.9 NC_006146.1 + 14811 0.67 0.7097
Target:  5'- aGGccGGCCGGGCCgGAGGaGggCACg- -3'
miRNA:   3'- aCCauUCGGUCCGGgCUCC-Ca-GUGga -5'
28741 5' -59.9 NC_006146.1 + 169163 0.67 0.7097
Target:  5'- cGGgagGGGCCGGcGCCUGcAGGGgggGCCg -3'
miRNA:   3'- aCCa--UUCGGUC-CGGGC-UCCCag-UGGa -5'
28741 5' -59.9 NC_006146.1 + 128876 0.67 0.713586
Target:  5'- gGcGUGAGcCCGGGCCCaGAGGGaguagcucggcaacgUCACg- -3'
miRNA:   3'- aC-CAUUC-GGUCCGGG-CUCCC---------------AGUGga -5'
28741 5' -59.9 NC_006146.1 + 104222 0.67 0.719396
Target:  5'- cGGggAAGCUGGGCUUccGGGUCAUCa -3'
miRNA:   3'- aCCa-UUCGGUCCGGGcuCCCAGUGGa -5'
28741 5' -59.9 NC_006146.1 + 28227 0.67 0.719396
Target:  5'- cGGc-GGCCGGaCCCGAGGaGgCGCCUg -3'
miRNA:   3'- aCCauUCGGUCcGGGCUCC-CaGUGGA- -5'
28741 5' -59.9 NC_006146.1 + 25149 0.67 0.719396
Target:  5'- cGGc-GGCCGGaCCCGAGGaGgCGCCUg -3'
miRNA:   3'- aCCauUCGGUCcGGGCUCC-CaGUGGA- -5'
28741 5' -59.9 NC_006146.1 + 9547 0.67 0.719396
Target:  5'- --uUGAGUCAGGUCUGAGaGGUUGCUg -3'
miRNA:   3'- accAUUCGGUCCGGGCUC-CCAGUGGa -5'
28741 5' -59.9 NC_006146.1 + 12837 0.67 0.719396
Target:  5'- cGGc-GGCCGGaCCCGAGGaGgCGCCUg -3'
miRNA:   3'- aCCauUCGGUCcGGGCUCC-CaGUGGA- -5'
28741 5' -59.9 NC_006146.1 + 110591 0.67 0.719396
Target:  5'- cGGUccGGGUCAGGUCgGuGGGGUC-CCa -3'
miRNA:   3'- aCCA--UUCGGUCCGGgC-UCCCAGuGGa -5'
28741 5' -59.9 NC_006146.1 + 15916 0.67 0.719396
Target:  5'- cGGc-GGCCGGaCCCGAGGaGgCGCCUg -3'
miRNA:   3'- aCCauUCGGUCcGGGCUCC-CaGUGGA- -5'
28741 5' -59.9 NC_006146.1 + 18993 0.67 0.719396
Target:  5'- cGGc-GGCCGGaCCCGAGGaGgCGCCUg -3'
miRNA:   3'- aCCauUCGGUCcGGGCUCC-CaGUGGA- -5'
28741 5' -59.9 NC_006146.1 + 22071 0.67 0.719396
Target:  5'- cGGc-GGCCGGaCCCGAGGaGgCGCCUg -3'
miRNA:   3'- aCCauUCGGUCcGGGCUCC-CaGUGGA- -5'
28741 5' -59.9 NC_006146.1 + 41099 0.67 0.723254
Target:  5'- aGGgGAGCCAGGCgUGcagggccuccacuuuAGGGUC-CCg -3'
miRNA:   3'- aCCaUUCGGUCCGgGC---------------UCCCAGuGGa -5'
28741 5' -59.9 NC_006146.1 + 79618 0.66 0.72902
Target:  5'- cGGUGAGCUcGuCCCGgggacAGGGUCACa- -3'
miRNA:   3'- aCCAUUCGGuCcGGGC-----UCCCAGUGga -5'
28741 5' -59.9 NC_006146.1 + 3814 0.66 0.72902
Target:  5'- aGGUcuGGGUCAGGCCaggcGGGG-CACCc -3'
miRNA:   3'- aCCA--UUCGGUCCGGgc--UCCCaGUGGa -5'
28741 5' -59.9 NC_006146.1 + 34405 0.66 0.72902
Target:  5'- aGGUGuGUCAuuuuaGCCCGuuGGGUUACCUg -3'
miRNA:   3'- aCCAUuCGGUc----CGGGCu-CCCAGUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.