miRNA display CGI


Results 61 - 80 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28741 5' -59.9 NC_006146.1 + 86578 0.71 0.484823
Target:  5'- gGGgcAGCUGGGCuuGAGGGgCAgCUg -3'
miRNA:   3'- aCCauUCGGUCCGggCUCCCaGUgGA- -5'
28741 5' -59.9 NC_006146.1 + 86612 0.71 0.484823
Target:  5'- gGGgcAGCUGGGCuuGAGGGgCAgCUg -3'
miRNA:   3'- aCCauUCGGUCCGggCUCCCaGUgGA- -5'
28741 5' -59.9 NC_006146.1 + 88337 0.68 0.617623
Target:  5'- aUGG-AGGCCguuGGGCCCaGGGGGUUaaaggaggcccauaACCUg -3'
miRNA:   3'- -ACCaUUCGG---UCCGGG-CUCCCAG--------------UGGA- -5'
28741 5' -59.9 NC_006146.1 + 88812 0.66 0.748023
Target:  5'- cUGGgcauguuuGGCUGGGCCUGAGGcUC-CCUg -3'
miRNA:   3'- -ACCau------UCGGUCCGGGCUCCcAGuGGA- -5'
28741 5' -59.9 NC_006146.1 + 91997 0.66 0.775783
Target:  5'- cUGGcGGGCCcGGCCUGGGGcugCugCUg -3'
miRNA:   3'- -ACCaUUCGGuCCGGGCUCCca-GugGA- -5'
28741 5' -59.9 NC_006146.1 + 92087 0.67 0.690129
Target:  5'- gGGgcGGCCcGGCCUGGGGcugCugCUg -3'
miRNA:   3'- aCCauUCGGuCCGGGCUCCca-GugGA- -5'
28741 5' -59.9 NC_006146.1 + 94803 0.9 0.02898
Target:  5'- -cGUAGGCCAGGCCCGGGGGUUGCCc -3'
miRNA:   3'- acCAUUCGGUCCGGGCUCCCAGUGGa -5'
28741 5' -59.9 NC_006146.1 + 94972 0.66 0.748023
Target:  5'- cUGGUAuaaagacccacuGGCCAGGCauGGGGGgCAgCUg -3'
miRNA:   3'- -ACCAU------------UCGGUCCGggCUCCCaGUgGA- -5'
28741 5' -59.9 NC_006146.1 + 104222 0.67 0.719396
Target:  5'- cGGggAAGCUGGGCUUccGGGUCAUCa -3'
miRNA:   3'- aCCa-UUCGGUCCGGGcuCCCAGUGGa -5'
28741 5' -59.9 NC_006146.1 + 104691 0.69 0.580901
Target:  5'- gGGgcAGCUGGGCCUGGaucucgucgccuGGGUCAgCUc -3'
miRNA:   3'- aCCauUCGGUCCGGGCU------------CCCAGUgGA- -5'
28741 5' -59.9 NC_006146.1 + 106140 0.67 0.699942
Target:  5'- gGGUGagagcuccaaGGCCAGGCUCGAGaaGUCAUa- -3'
miRNA:   3'- aCCAU----------UCGGUCCGGGCUCc-CAGUGga -5'
28741 5' -59.9 NC_006146.1 + 110591 0.67 0.719396
Target:  5'- cGGUccGGGUCAGGUCgGuGGGGUC-CCa -3'
miRNA:   3'- aCCA--UUCGGUCCGGgC-UCCCAGuGGa -5'
28741 5' -59.9 NC_006146.1 + 112511 0.68 0.620612
Target:  5'- cGGUccagGGGCCgguggaGGGCCU--GGGUCACCUc -3'
miRNA:   3'- aCCA----UUCGG------UCCGGGcuCCCAGUGGA- -5'
28741 5' -59.9 NC_006146.1 + 114817 0.68 0.610654
Target:  5'- cUGGU-GGCCGacaccuacuuGGCCCGGuGGGaCGCCUu -3'
miRNA:   3'- -ACCAuUCGGU----------CCGGGCU-CCCaGUGGA- -5'
28741 5' -59.9 NC_006146.1 + 115237 0.66 0.757384
Target:  5'- aGG-GAGCCcagcugagAGGCCC-AGGGauUCACCg -3'
miRNA:   3'- aCCaUUCGG--------UCCGGGcUCCC--AGUGGa -5'
28741 5' -59.9 NC_006146.1 + 116097 0.72 0.388786
Target:  5'- aUGGUGgcGGCCA--CCCGAGGGUCcCCg -3'
miRNA:   3'- -ACCAU--UCGGUccGGGCUCCCAGuGGa -5'
28741 5' -59.9 NC_006146.1 + 116395 0.68 0.620612
Target:  5'- aGGaggGAGCgGGGCCCuGGGGaGUCuCCUc -3'
miRNA:   3'- aCCa--UUCGgUCCGGG-CUCC-CAGuGGA- -5'
28741 5' -59.9 NC_006146.1 + 117979 0.66 0.748023
Target:  5'- cGGacgAGGCCAGcGCCCccgGGGGGcCACg- -3'
miRNA:   3'- aCCa--UUCGGUC-CGGG---CUCCCaGUGga -5'
28741 5' -59.9 NC_006146.1 + 126062 0.68 0.630577
Target:  5'- gGGUAGGguaaaCGGGCaCGAGGGgCGCCg -3'
miRNA:   3'- aCCAUUCg----GUCCGgGCUCCCaGUGGa -5'
28741 5' -59.9 NC_006146.1 + 126632 0.69 0.580901
Target:  5'- cGGUGGGCacaccccgGGGCCCGcAGGGgcaauggaCACCg -3'
miRNA:   3'- aCCAUUCGg-------UCCGGGC-UCCCa-------GUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.