miRNA display CGI


Results 101 - 120 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28741 5' -59.9 NC_006146.1 + 86544 0.71 0.484823
Target:  5'- gGGgcAGCUGGGCuuGAGGGgCAgCUg -3'
miRNA:   3'- aCCauUCGGUCCGggCUCCCaGUgGA- -5'
28741 5' -59.9 NC_006146.1 + 166265 0.71 0.457446
Target:  5'- gGGUAuauGUUcuGGGCCCGcAGGGUCugCa -3'
miRNA:   3'- aCCAUu--CGG--UCCGGGC-UCCCAGugGa -5'
28741 5' -59.9 NC_006146.1 + 57224 0.71 0.439661
Target:  5'- cGG-AGGCCGGGCCCGGGcccgaGcCACCUc -3'
miRNA:   3'- aCCaUUCGGUCCGGGCUCc----CaGUGGA- -5'
28741 5' -59.9 NC_006146.1 + 158421 0.72 0.431788
Target:  5'- aUGGggAAGCCggaguccagagGGGCCCGAGGGccugaaaggccccggCGCCUg -3'
miRNA:   3'- -ACCa-UUCGG-----------UCCGGGCUCCCa--------------GUGGA- -5'
28741 5' -59.9 NC_006146.1 + 155342 0.72 0.431788
Target:  5'- aUGGggAAGCCggaguccagagGGGCCCGAGGGccugaaaggccccggCGCCUg -3'
miRNA:   3'- -ACCa-UUCGG-----------UCCGGGCUCCCa--------------GUGGA- -5'
28741 5' -59.9 NC_006146.1 + 152264 0.72 0.431788
Target:  5'- aUGGggAAGCCggaguccagagGGGCCCGAGGGccugaaaggccccggCGCCUg -3'
miRNA:   3'- -ACCa-UUCGG-----------UCCGGGCUCCCa--------------GUGGA- -5'
28741 5' -59.9 NC_006146.1 + 149186 0.72 0.431788
Target:  5'- aUGGggAAGCCggaguccagagGGGCCCGAGGGccugaaaggccccggCGCCUg -3'
miRNA:   3'- -ACCa-UUCGG-----------UCCGGGCUCCCa--------------GUGGA- -5'
28741 5' -59.9 NC_006146.1 + 156771 1.08 0.001575
Target:  5'- aUGGUAAGCCAGGCCCGAGGGUCACCUa -3'
miRNA:   3'- -ACCAUUCGGUCCGGGCUCCCAGUGGA- -5'
28741 5' -59.9 NC_006146.1 + 86612 0.71 0.484823
Target:  5'- gGGgcAGCUGGGCuuGAGGGgCAgCUg -3'
miRNA:   3'- aCCauUCGGUCCGggCUCCCaGUgGA- -5'
28741 5' -59.9 NC_006146.1 + 33187 0.71 0.484823
Target:  5'- gGGUAGGcCCGGGCacccCCGGGGGgagGCCg -3'
miRNA:   3'- aCCAUUC-GGUCCG----GGCUCCCag-UGGa -5'
28741 5' -59.9 NC_006146.1 + 143030 0.72 0.431788
Target:  5'- aUGGggAAGCCggaguccagagGGGCCCGAGGGccugaaaggccccggCGCCUg -3'
miRNA:   3'- -ACCa-UUCGG-----------UCCGGGCUCCCa--------------GUGGA- -5'
28741 5' -59.9 NC_006146.1 + 86454 0.67 0.670376
Target:  5'- gGGgcAGCUGGGCuUUGAGGGggcaGCCUg -3'
miRNA:   3'- aCCauUCGGUCCG-GGCUCCCag--UGGA- -5'
28741 5' -59.9 NC_006146.1 + 116395 0.68 0.620612
Target:  5'- aGGaggGAGCgGGGCCCuGGGGaGUCuCCUc -3'
miRNA:   3'- aCCa--UUCGgUCCGGG-CUCC-CAGuGGA- -5'
28741 5' -59.9 NC_006146.1 + 112511 0.68 0.620612
Target:  5'- cGGUccagGGGCCgguggaGGGCCU--GGGUCACCUc -3'
miRNA:   3'- aCCA----UUCGG------UCCGGGcuCCCAGUGGA- -5'
28741 5' -59.9 NC_006146.1 + 88337 0.68 0.617623
Target:  5'- aUGG-AGGCCguuGGGCCCaGGGGGUUaaaggaggcccauaACCUg -3'
miRNA:   3'- -ACCaUUCGG---UCCGGG-CUCCCAG--------------UGGA- -5'
28741 5' -59.9 NC_006146.1 + 114817 0.68 0.610654
Target:  5'- cUGGU-GGCCGacaccuacuuGGCCCGGuGGGaCGCCUu -3'
miRNA:   3'- -ACCAuUCGGU----------CCGGGCU-CCCaGUGGA- -5'
28741 5' -59.9 NC_006146.1 + 161751 0.76 0.232024
Target:  5'- gGGUGgcGGCUgAGGUCCGAGGGggCGCCUg -3'
miRNA:   3'- aCCAU--UCGG-UCCGGGCUCCCa-GUGGA- -5'
28741 5' -59.9 NC_006146.1 + 77923 0.74 0.334527
Target:  5'- cGGgcGGCCucgcAGGUgCCGGGGGUCGCUg -3'
miRNA:   3'- aCCauUCGG----UCCG-GGCUCCCAGUGGa -5'
28741 5' -59.9 NC_006146.1 + 24049 0.72 0.411203
Target:  5'- gGGUgacgcggccccGAGCCAGGCCCGGGcucuacgcuggcgcGGccUCGCCUg -3'
miRNA:   3'- aCCA-----------UUCGGUCCGGGCUC--------------CC--AGUGGA- -5'
28741 5' -59.9 NC_006146.1 + 137201 0.72 0.422278
Target:  5'- gGGUAGGCCGGGCacaccCCGGGGaGgaaGCCg -3'
miRNA:   3'- aCCAUUCGGUCCG-----GGCUCC-Cag-UGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.