miRNA display CGI


Results 121 - 134 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28741 5' -59.9 NC_006146.1 + 158421 0.72 0.431788
Target:  5'- aUGGggAAGCCggaguccagagGGGCCCGAGGGccugaaaggccccggCGCCUg -3'
miRNA:   3'- -ACCa-UUCGG-----------UCCGGGCUCCCa--------------GUGGA- -5'
28741 5' -59.9 NC_006146.1 + 126632 0.69 0.580901
Target:  5'- cGGUGGGCacaccccgGGGCCCGcAGGGgcaauggaCACCg -3'
miRNA:   3'- aCCAUUCGg-------UCCGGGC-UCCCa-------GUGGa -5'
28741 5' -59.9 NC_006146.1 + 62838 0.69 0.580901
Target:  5'- cUGGccgccguGGCCAGGCCgGAGGuucucuUCACCa -3'
miRNA:   3'- -ACCau-----UCGGUCCGGgCUCCc-----AGUGGa -5'
28741 5' -59.9 NC_006146.1 + 104691 0.69 0.580901
Target:  5'- gGGgcAGCUGGGCCUGGaucucgucgccuGGGUCAgCUc -3'
miRNA:   3'- aCCauUCGGUCCGGGCU------------CCCAGUgGA- -5'
28741 5' -59.9 NC_006146.1 + 86510 0.69 0.561228
Target:  5'- gGGgcAGCUGGGCuuGAGGGgcaACUg -3'
miRNA:   3'- aCCauUCGGUCCGggCUCCCag-UGGa -5'
28741 5' -59.9 NC_006146.1 + 137014 0.7 0.522488
Target:  5'- gGGUAGGCCGGGCacaccCCGGGGaGgagGCCg -3'
miRNA:   3'- aCCAUUCGGUCCG-----GGCUCC-Cag-UGGa -5'
28741 5' -59.9 NC_006146.1 + 162416 0.7 0.503502
Target:  5'- gUGGUGGGCaCGGGCuaGGGGuGUCAgCUc -3'
miRNA:   3'- -ACCAUUCG-GUCCGggCUCC-CAGUgGA- -5'
28741 5' -59.9 NC_006146.1 + 33187 0.71 0.484823
Target:  5'- gGGUAGGcCCGGGCacccCCGGGGGgagGCCg -3'
miRNA:   3'- aCCAUUC-GGUCCG----GGCUCCCag-UGGa -5'
28741 5' -59.9 NC_006146.1 + 86612 0.71 0.484823
Target:  5'- gGGgcAGCUGGGCuuGAGGGgCAgCUg -3'
miRNA:   3'- aCCauUCGGUCCGggCUCCCaGUgGA- -5'
28741 5' -59.9 NC_006146.1 + 86578 0.71 0.484823
Target:  5'- gGGgcAGCUGGGCuuGAGGGgCAgCUg -3'
miRNA:   3'- aCCauUCGGUCCGggCUCCCaGUgGA- -5'
28741 5' -59.9 NC_006146.1 + 86544 0.71 0.484823
Target:  5'- gGGgcAGCUGGGCuuGAGGGgCAgCUg -3'
miRNA:   3'- aCCauUCGGUCCGggCUCCCaGUgGA- -5'
28741 5' -59.9 NC_006146.1 + 166265 0.71 0.457446
Target:  5'- gGGUAuauGUUcuGGGCCCGcAGGGUCugCa -3'
miRNA:   3'- aCCAUu--CGG--UCCGGGC-UCCCAGugGa -5'
28741 5' -59.9 NC_006146.1 + 57224 0.71 0.439661
Target:  5'- cGG-AGGCCGGGCCCGGGcccgaGcCACCUc -3'
miRNA:   3'- aCCaUUCGGUCCGGGCUCc----CaGUGGA- -5'
28741 5' -59.9 NC_006146.1 + 141382 1.08 0.001575
Target:  5'- aUGGUAAGCCAGGCCCGAGGGUCACCUa -3'
miRNA:   3'- -ACCAUUCGGUCCGGGCUCCCAGUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.