Results 101 - 120 of 134 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28741 | 5' | -59.9 | NC_006146.1 | + | 33603 | 0.73 | 0.364838 |
Target: 5'- gGGUGGGCguGGUCCGcGGGUucggugCACCUg -3' miRNA: 3'- aCCAUUCGguCCGGGCuCCCA------GUGGA- -5' |
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28741 | 5' | -59.9 | NC_006146.1 | + | 137784 | 0.73 | 0.354782 |
Target: 5'- gGGUGGGCCuGGUCCGccggauccgcuucgGGGGUcCGCCg -3' miRNA: 3'- aCCAUUCGGuCCGGGC--------------UCCCA-GUGGa -5' |
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28741 | 5' | -59.9 | NC_006146.1 | + | 170522 | 0.73 | 0.348691 |
Target: 5'- cGGcGGGCgGGGCCUGAGGGggcgcggcgauugUCGCCg -3' miRNA: 3'- aCCaUUCGgUCCGGGCUCCC-------------AGUGGa -5' |
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28741 | 5' | -59.9 | NC_006146.1 | + | 33781 | 0.74 | 0.325081 |
Target: 5'- gGGUGGGCguGGUCCGAuGGGUCcgcggguuuggugcACCUg -3' miRNA: 3'- aCCAUUCGguCCGGGCU-CCCAG--------------UGGA- -5' |
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28741 | 5' | -59.9 | NC_006146.1 | + | 153306 | 0.7 | 0.512959 |
Target: 5'- aGGca--CCAGGCCCGGGccaGGUCGCCc -3' miRNA: 3'- aCCauucGGUCCGGGCUC---CCAGUGGa -5' |
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28741 | 5' | -59.9 | NC_006146.1 | + | 161068 | 0.7 | 0.512959 |
Target: 5'- gGGUGAGCCuaGGGCCCGAGa-UCAUg- -3' miRNA: 3'- aCCAUUCGG--UCCGGGCUCccAGUGga -5' |
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28741 | 5' | -59.9 | NC_006146.1 | + | 33103 | 0.69 | 0.551459 |
Target: 5'- gGGgcAGCCGGGUggccgCCGGcGGGUuCGCCg -3' miRNA: 3'- aCCauUCGGUCCG-----GGCU-CCCA-GUGGa -5' |
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28741 | 5' | -59.9 | NC_006146.1 | + | 19037 | 0.68 | 0.649509 |
Target: 5'- gGGcAGGCCGGGUCUcgggucuGGGGGUCugUg -3' miRNA: 3'- aCCaUUCGGUCCGGG-------CUCCCAGugGa -5' |
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28741 | 5' | -59.9 | NC_006146.1 | + | 12882 | 0.68 | 0.649509 |
Target: 5'- gGGcAGGCCGGGUCUcgggucuGGGGGUCugUg -3' miRNA: 3'- aCCaUUCGGUCCGGG-------CUCCCAGugGa -5' |
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28741 | 5' | -59.9 | NC_006146.1 | + | 169977 | 0.68 | 0.640544 |
Target: 5'- cGGgaGGCCGGcgcgcGCCCG-GGGUC-CCg -3' miRNA: 3'- aCCauUCGGUC-----CGGGCuCCCAGuGGa -5' |
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28741 | 5' | -59.9 | NC_006146.1 | + | 169045 | 0.68 | 0.640544 |
Target: 5'- cGGgaGGCCGGcgcgcGCCCG-GGGUC-CCg -3' miRNA: 3'- aCCauUCGGUC-----CGGGCuCCCAGuGGa -5' |
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28741 | 5' | -59.9 | NC_006146.1 | + | 168113 | 0.68 | 0.640544 |
Target: 5'- cGGgaGGCCGGcgcgcGCCCG-GGGUC-CCg -3' miRNA: 3'- aCCauUCGGUC-----CGGGCuCCCAGuGGa -5' |
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28741 | 5' | -59.9 | NC_006146.1 | + | 167181 | 0.68 | 0.640544 |
Target: 5'- cGGgaGGCCGGcgcgcGCCCG-GGGUC-CCg -3' miRNA: 3'- aCCauUCGGUC-----CGGGCuCCCAGuGGa -5' |
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28741 | 5' | -59.9 | NC_006146.1 | + | 156718 | 0.68 | 0.630577 |
Target: 5'- -----cGuCCAGGCuCCGGGGGUCcaGCCUg -3' miRNA: 3'- accauuC-GGUCCG-GGCUCCCAG--UGGA- -5' |
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28741 | 5' | -59.9 | NC_006146.1 | + | 126062 | 0.68 | 0.630577 |
Target: 5'- gGGUAGGguaaaCGGGCaCGAGGGgCGCCg -3' miRNA: 3'- aCCAUUCg----GUCCGgGCUCCCaGUGGa -5' |
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28741 | 5' | -59.9 | NC_006146.1 | + | 15960 | 0.68 | 0.630577 |
Target: 5'- gGGcAGGCCggucucGGGUCUGGGGGUCugUg -3' miRNA: 3'- aCCaUUCGG------UCCGGGCUCCCAGugGa -5' |
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28741 | 5' | -59.9 | NC_006146.1 | + | 33749 | 0.69 | 0.590792 |
Target: 5'- cGGUGGGUguGGUCCGcuGGGUcCGCUg -3' miRNA: 3'- aCCAUUCGguCCGGGCu-CCCA-GUGGa -5' |
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28741 | 5' | -59.9 | NC_006146.1 | + | 127573 | 0.69 | 0.571044 |
Target: 5'- aGGUGGuGUCGGuGCUCGAGGG-CACUa -3' miRNA: 3'- aCCAUU-CGGUC-CGGGCUCCCaGUGGa -5' |
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28741 | 5' | -59.9 | NC_006146.1 | + | 33349 | 0.69 | 0.551459 |
Target: 5'- gGGgcAGCCGGGUggccgCCGGuGGGUcCGCCg -3' miRNA: 3'- aCCauUCGGUCCG-----GGCU-CCCA-GUGGa -5' |
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28741 | 5' | -59.9 | NC_006146.1 | + | 33227 | 0.69 | 0.551459 |
Target: 5'- gGGgcAGCCGGGUggccgCCGGcGGGUcCGCCg -3' miRNA: 3'- aCCauUCGGUCCG-----GGCU-CCCA-GUGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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