miRNA display CGI


Results 41 - 60 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28741 5' -59.9 NC_006146.1 + 33103 0.69 0.551459
Target:  5'- gGGgcAGCCGGGUggccgCCGGcGGGUuCGCCg -3'
miRNA:   3'- aCCauUCGGUCCG-----GGCU-CCCA-GUGGa -5'
28741 5' -59.9 NC_006146.1 + 33227 0.69 0.551459
Target:  5'- gGGgcAGCCGGGUggccgCCGGcGGGUcCGCCg -3'
miRNA:   3'- aCCauUCGGUCCG-----GGCU-CCCA-GUGGa -5'
28741 5' -59.9 NC_006146.1 + 33349 0.69 0.551459
Target:  5'- gGGgcAGCCGGGUggccgCCGGuGGGUcCGCCg -3'
miRNA:   3'- aCCauUCGGUCCG-----GGCU-CCCA-GUGGa -5'
28741 5' -59.9 NC_006146.1 + 86510 0.69 0.561228
Target:  5'- gGGgcAGCUGGGCuuGAGGGgcaACUg -3'
miRNA:   3'- aCCauUCGGUCCGggCUCCCag-UGGa -5'
28741 5' -59.9 NC_006146.1 + 127573 0.69 0.571044
Target:  5'- aGGUGGuGUCGGuGCUCGAGGG-CACUa -3'
miRNA:   3'- aCCAUU-CGGUC-CGGGCUCCCaGUGGa -5'
28741 5' -59.9 NC_006146.1 + 126632 0.69 0.580901
Target:  5'- cGGUGGGCacaccccgGGGCCCGcAGGGgcaauggaCACCg -3'
miRNA:   3'- aCCAUUCGg-------UCCGGGC-UCCCa-------GUGGa -5'
28741 5' -59.9 NC_006146.1 + 62838 0.69 0.580901
Target:  5'- cUGGccgccguGGCCAGGCCgGAGGuucucuUCACCa -3'
miRNA:   3'- -ACCau-----UCGGUCCGGgCUCCc-----AGUGGa -5'
28741 5' -59.9 NC_006146.1 + 104691 0.69 0.580901
Target:  5'- gGGgcAGCUGGGCCUGGaucucgucgccuGGGUCAgCUc -3'
miRNA:   3'- aCCauUCGGUCCGGGCU------------CCCAGUgGA- -5'
28741 5' -59.9 NC_006146.1 + 33749 0.69 0.590792
Target:  5'- cGGUGGGUguGGUCCGcuGGGUcCGCUg -3'
miRNA:   3'- aCCAUUCGguCCGGGCu-CCCA-GUGGa -5'
28741 5' -59.9 NC_006146.1 + 114817 0.68 0.610654
Target:  5'- cUGGU-GGCCGacaccuacuuGGCCCGGuGGGaCGCCUu -3'
miRNA:   3'- -ACCAuUCGGU----------CCGGGCU-CCCaGUGGA- -5'
28741 5' -59.9 NC_006146.1 + 88337 0.68 0.617623
Target:  5'- aUGG-AGGCCguuGGGCCCaGGGGGUUaaaggaggcccauaACCUg -3'
miRNA:   3'- -ACCaUUCGG---UCCGGG-CUCCCAG--------------UGGA- -5'
28741 5' -59.9 NC_006146.1 + 112511 0.68 0.620612
Target:  5'- cGGUccagGGGCCgguggaGGGCCU--GGGUCACCUc -3'
miRNA:   3'- aCCA----UUCGG------UCCGGGcuCCCAGUGGA- -5'
28741 5' -59.9 NC_006146.1 + 116395 0.68 0.620612
Target:  5'- aGGaggGAGCgGGGCCCuGGGGaGUCuCCUc -3'
miRNA:   3'- aCCa--UUCGgUCCGGG-CUCC-CAGuGGA- -5'
28741 5' -59.9 NC_006146.1 + 15960 0.68 0.630577
Target:  5'- gGGcAGGCCggucucGGGUCUGGGGGUCugUg -3'
miRNA:   3'- aCCaUUCGG------UCCGGGCUCCCAGugGa -5'
28741 5' -59.9 NC_006146.1 + 126062 0.68 0.630577
Target:  5'- gGGUAGGguaaaCGGGCaCGAGGGgCGCCg -3'
miRNA:   3'- aCCAUUCg----GUCCGgGCUCCCaGUGGa -5'
28741 5' -59.9 NC_006146.1 + 156718 0.68 0.630577
Target:  5'- -----cGuCCAGGCuCCGGGGGUCcaGCCUg -3'
miRNA:   3'- accauuC-GGUCCG-GGCUCCCAG--UGGA- -5'
28741 5' -59.9 NC_006146.1 + 169045 0.68 0.640544
Target:  5'- cGGgaGGCCGGcgcgcGCCCG-GGGUC-CCg -3'
miRNA:   3'- aCCauUCGGUC-----CGGGCuCCCAGuGGa -5'
28741 5' -59.9 NC_006146.1 + 169977 0.68 0.640544
Target:  5'- cGGgaGGCCGGcgcgcGCCCG-GGGUC-CCg -3'
miRNA:   3'- aCCauUCGGUC-----CGGGCuCCCAGuGGa -5'
28741 5' -59.9 NC_006146.1 + 168113 0.68 0.640544
Target:  5'- cGGgaGGCCGGcgcgcGCCCG-GGGUC-CCg -3'
miRNA:   3'- aCCauUCGGUC-----CGGGCuCCCAGuGGa -5'
28741 5' -59.9 NC_006146.1 + 167181 0.68 0.640544
Target:  5'- cGGgaGGCCGGcgcgcGCCCG-GGGUC-CCg -3'
miRNA:   3'- aCCauUCGGUC-----CGGGCuCCCAGuGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.