Results 61 - 80 of 134 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28741 | 5' | -59.9 | NC_006146.1 | + | 145439 | 0.67 | 0.690129 |
Target: 5'- gGGUcuuGGGCCugggAGGUCCGGGGuGUUgaGCCUg -3' miRNA: 3'- aCCA---UUCGG----UCCGGGCUCC-CAG--UGGA- -5' |
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28741 | 5' | -59.9 | NC_006146.1 | + | 92087 | 0.67 | 0.690129 |
Target: 5'- gGGgcGGCCcGGCCUGGGGcugCugCUg -3' miRNA: 3'- aCCauUCGGuCCGGGCUCCca-GugGA- -5' |
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28741 | 5' | -59.9 | NC_006146.1 | + | 142361 | 0.67 | 0.690129 |
Target: 5'- gGGUcuuGGGCCugggAGGUCCGGGGuGUUgaGCCUg -3' miRNA: 3'- aCCA---UUCGG----UCCGGGCUCC-CAG--UGGA- -5' |
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28741 | 5' | -59.9 | NC_006146.1 | + | 148517 | 0.67 | 0.690129 |
Target: 5'- gGGUcuuGGGCCugggAGGUCCGGGGuGUUgaGCCUg -3' miRNA: 3'- aCCA---UUCGG----UCCGGGCUCC-CAG--UGGA- -5' |
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28741 | 5' | -59.9 | NC_006146.1 | + | 86454 | 0.67 | 0.670376 |
Target: 5'- gGGgcAGCUGGGCuUUGAGGGggcaGCCUg -3' miRNA: 3'- aCCauUCGGUCCG-GGCUCCCag--UGGA- -5' |
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28741 | 5' | -59.9 | NC_006146.1 | + | 50531 | 0.67 | 0.670376 |
Target: 5'- aGGUcagGAGCCgcuccAGGuCCCGGGuGGgCACCUg -3' miRNA: 3'- aCCA---UUCGG-----UCC-GGGCUC-CCaGUGGA- -5' |
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28741 | 5' | -59.9 | NC_006146.1 | + | 145127 | 0.67 | 0.670376 |
Target: 5'- aGGccUGGGCCAGGCUCuGGccGGUCACUa -3' miRNA: 3'- aCC--AUUCGGUCCGGGcUC--CCAGUGGa -5' |
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28741 | 5' | -59.9 | NC_006146.1 | + | 53115 | 0.68 | 0.660451 |
Target: 5'- aGGc-GGCCcGGCCCGGGGGagCGCg- -3' miRNA: 3'- aCCauUCGGuCCGGGCUCCCa-GUGga -5' |
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28741 | 5' | -59.9 | NC_006146.1 | + | 137860 | 0.68 | 0.654485 |
Target: 5'- gGGUGGGCguguccCGGGCCCcgccccgggccggcaGGGGGUCcCCg -3' miRNA: 3'- aCCAUUCG------GUCCGGG---------------CUCCCAGuGGa -5' |
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28741 | 5' | -59.9 | NC_006146.1 | + | 19037 | 0.68 | 0.649509 |
Target: 5'- gGGcAGGCCGGGUCUcgggucuGGGGGUCugUg -3' miRNA: 3'- aCCaUUCGGUCCGGG-------CUCCCAGugGa -5' |
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28741 | 5' | -59.9 | NC_006146.1 | + | 25193 | 0.68 | 0.649509 |
Target: 5'- gGGcAGGCCGGGUCUcgggucuGGGGGUCugUg -3' miRNA: 3'- aCCaUUCGGUCCGGG-------CUCCCAGugGa -5' |
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28741 | 5' | -59.9 | NC_006146.1 | + | 12882 | 0.68 | 0.649509 |
Target: 5'- gGGcAGGCCGGGUCUcgggucuGGGGGUCugUg -3' miRNA: 3'- aCCaUUCGGUCCGGG-------CUCCCAGugGa -5' |
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28741 | 5' | -59.9 | NC_006146.1 | + | 28271 | 0.68 | 0.649509 |
Target: 5'- gGGcAGGCCGGGUCUcgggucuGGGGGUCugUg -3' miRNA: 3'- aCCaUUCGGUCCGGG-------CUCCCAGugGa -5' |
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28741 | 5' | -59.9 | NC_006146.1 | + | 22115 | 0.68 | 0.649509 |
Target: 5'- gGGcAGGCCGGGUCUcgggucuGGGGGUCugUg -3' miRNA: 3'- aCCaUUCGGUCCGGG-------CUCCCAGugGa -5' |
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28741 | 5' | -59.9 | NC_006146.1 | + | 167181 | 0.68 | 0.640544 |
Target: 5'- cGGgaGGCCGGcgcgcGCCCG-GGGUC-CCg -3' miRNA: 3'- aCCauUCGGUC-----CGGGCuCCCAGuGGa -5' |
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28741 | 5' | -59.9 | NC_006146.1 | + | 168113 | 0.68 | 0.640544 |
Target: 5'- cGGgaGGCCGGcgcgcGCCCG-GGGUC-CCg -3' miRNA: 3'- aCCauUCGGUC-----CGGGCuCCCAGuGGa -5' |
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28741 | 5' | -59.9 | NC_006146.1 | + | 169045 | 0.68 | 0.640544 |
Target: 5'- cGGgaGGCCGGcgcgcGCCCG-GGGUC-CCg -3' miRNA: 3'- aCCauUCGGUC-----CGGGCuCCCAGuGGa -5' |
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28741 | 5' | -59.9 | NC_006146.1 | + | 169977 | 0.68 | 0.640544 |
Target: 5'- cGGgaGGCCGGcgcgcGCCCG-GGGUC-CCg -3' miRNA: 3'- aCCauUCGGUC-----CGGGCuCCCAGuGGa -5' |
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28741 | 5' | -59.9 | NC_006146.1 | + | 156718 | 0.68 | 0.630577 |
Target: 5'- -----cGuCCAGGCuCCGGGGGUCcaGCCUg -3' miRNA: 3'- accauuC-GGUCCG-GGCUCCCAG--UGGA- -5' |
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28741 | 5' | -59.9 | NC_006146.1 | + | 15960 | 0.68 | 0.630577 |
Target: 5'- gGGcAGGCCggucucGGGUCUGGGGGUCugUg -3' miRNA: 3'- aCCaUUCGG------UCCGGGCUCCCAGugGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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