miRNA display CGI


Results 1 - 20 of 103 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28742 5' -53.6 NC_006146.1 + 135 0.73 0.689684
Target:  5'- aGGACu--AUGGCGCCUGGAUgGCUg- -3'
miRNA:   3'- -UCUGuuuUACCGCGGGUCUAgCGGag -5'
28742 5' -53.6 NC_006146.1 + 4790 0.74 0.637732
Target:  5'- cAGuACGAGuuucuGCGCCCGGggCGCCUCa -3'
miRNA:   3'- -UC-UGUUUuac--CGCGGGUCuaGCGGAG- -5'
28742 5' -53.6 NC_006146.1 + 6013 0.66 0.970962
Target:  5'- gAGGCAAcgaGG-GCCCAGAUCcUCUCc -3'
miRNA:   3'- -UCUGUUuuaCCgCGGGUCUAGcGGAG- -5'
28742 5' -53.6 NC_006146.1 + 7826 0.71 0.769705
Target:  5'- gAGACuccAUGGCGCCCGGuagacaccuGUCGgaCCUCu -3'
miRNA:   3'- -UCUGuuuUACCGCGGGUC---------UAGC--GGAG- -5'
28742 5' -53.6 NC_006146.1 + 11443 0.71 0.806968
Target:  5'- uGGcCAAGGUGGCgGCCCucaaGGAguucccCGCCUCg -3'
miRNA:   3'- -UCuGUUUUACCG-CGGG----UCUa-----GCGGAG- -5'
28742 5' -53.6 NC_006146.1 + 12287 0.67 0.940416
Target:  5'- gGGugGGAucaGGCuaaCCCAaGUCGCCUCa -3'
miRNA:   3'- -UCugUUUua-CCGc--GGGUcUAGCGGAG- -5'
28742 5' -53.6 NC_006146.1 + 13272 0.67 0.949464
Target:  5'- gGGACc----GGCGCCCcagagccccucGGGUCcGCCUCc -3'
miRNA:   3'- -UCUGuuuuaCCGCGGG-----------UCUAG-CGGAG- -5'
28742 5' -53.6 NC_006146.1 + 15366 0.67 0.940416
Target:  5'- gGGugGGAucaGGCuaaCCCAaGUCGCCUCa -3'
miRNA:   3'- -UCugUUUua-CCGc--GGGUcUAGCGGAG- -5'
28742 5' -53.6 NC_006146.1 + 16350 0.67 0.949464
Target:  5'- gGGACc----GGCGCCCcagagccccucGGGUCcGCCUCc -3'
miRNA:   3'- -UCUGuuuuaCCGCGGG-----------UCUAG-CGGAG- -5'
28742 5' -53.6 NC_006146.1 + 18444 0.67 0.940416
Target:  5'- gGGugGGAucaGGCuaaCCCAaGUCGCCUCa -3'
miRNA:   3'- -UCugUUUua-CCGc--GGGUcUAGCGGAG- -5'
28742 5' -53.6 NC_006146.1 + 19428 0.67 0.949464
Target:  5'- gGGACc----GGCGCCCcagagccccucGGGUCcGCCUCc -3'
miRNA:   3'- -UCUGuuuuaCCGCGGG-----------UCUAG-CGGAG- -5'
28742 5' -53.6 NC_006146.1 + 20279 0.68 0.90031
Target:  5'- cGugGAGGUGGCcgagaucGCCaAGAUCGCC-Ca -3'
miRNA:   3'- uCugUUUUACCG-------CGGgUCUAGCGGaG- -5'
28742 5' -53.6 NC_006146.1 + 21522 0.67 0.940416
Target:  5'- gGGugGGAucaGGCuaaCCCAaGUCGCCUCa -3'
miRNA:   3'- -UCugUUUua-CCGc--GGGUcUAGCGGAG- -5'
28742 5' -53.6 NC_006146.1 + 22506 0.67 0.949464
Target:  5'- gGGACc----GGCGCCCcagagccccucGGGUCcGCCUCc -3'
miRNA:   3'- -UCUGuuuuaCCGCGGG-----------UCUAG-CGGAG- -5'
28742 5' -53.6 NC_006146.1 + 23040 0.68 0.924994
Target:  5'- cGGAagAAAGUGGCGCCU-GAucugcaacgUCGCCUUc -3'
miRNA:   3'- -UCUg-UUUUACCGCGGGuCU---------AGCGGAG- -5'
28742 5' -53.6 NC_006146.1 + 23725 0.67 0.940415
Target:  5'- cGGGCGAAggGGCG-CCGGucugCGCCg- -3'
miRNA:   3'- -UCUGUUUuaCCGCgGGUCua--GCGGag -5'
28742 5' -53.6 NC_006146.1 + 24600 0.67 0.940416
Target:  5'- gGGugGGAucaGGCuaaCCCAaGUCGCCUCa -3'
miRNA:   3'- -UCugUUUua-CCGc--GGGUcUAGCGGAG- -5'
28742 5' -53.6 NC_006146.1 + 25584 0.67 0.949464
Target:  5'- gGGACc----GGCGCCCcagagccccucGGGUCcGCCUCc -3'
miRNA:   3'- -UCUGuuuuaCCGCGGG-----------UCUAG-CGGAG- -5'
28742 5' -53.6 NC_006146.1 + 27678 0.67 0.940416
Target:  5'- gGGugGGAucaGGCuaaCCCAaGUCGCCUCa -3'
miRNA:   3'- -UCugUUUua-CCGc--GGGUcUAGCGGAG- -5'
28742 5' -53.6 NC_006146.1 + 28662 0.67 0.949464
Target:  5'- gGGACc----GGCGCCCcagagccccucGGGUCcGCCUCc -3'
miRNA:   3'- -UCUGuuuuaCCGCGGG-----------UCUAG-CGGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.