miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28742 5' -53.6 NC_006146.1 + 133833 0.77 0.475239
Target:  5'- gGGugAGGAUGGUggGCCCAGAcgcaGCCUCu -3'
miRNA:   3'- -UCugUUUUACCG--CGGGUCUag--CGGAG- -5'
28742 5' -53.6 NC_006146.1 + 67788 0.68 0.900961
Target:  5'- gGGACGuGAcGGCGgCCAGGcucugcccCGCCUCg -3'
miRNA:   3'- -UCUGUuUUaCCGCgGGUCUa-------GCGGAG- -5'
28742 5' -53.6 NC_006146.1 + 130968 0.68 0.900961
Target:  5'- gGGuCAGGA-GGCGCCCAGAUa-CUUCc -3'
miRNA:   3'- -UCuGUUUUaCCGCGGGUCUAgcGGAG- -5'
28742 5' -53.6 NC_006146.1 + 128180 0.66 0.970962
Target:  5'- cGACGccGGGaGGCgGCCCAGGggggCGCCg- -3'
miRNA:   3'- uCUGU--UUUaCCG-CGGGUCUa---GCGGag -5'
28742 5' -53.6 NC_006146.1 + 135 0.73 0.689684
Target:  5'- aGGACu--AUGGCGCCUGGAUgGCUg- -3'
miRNA:   3'- -UCUGuuuUACCGCGGGUCUAgCGGag -5'
28742 5' -53.6 NC_006146.1 + 57996 0.72 0.720331
Target:  5'- aGGACGAGcUGGagGCCCGGGUCucgGCCUUc -3'
miRNA:   3'- -UCUGUUUuACCg-CGGGUCUAG---CGGAG- -5'
28742 5' -53.6 NC_006146.1 + 86521 0.71 0.806969
Target:  5'- gAGGCcauGAUGGcCGCCCGGuccaCGCCUa -3'
miRNA:   3'- -UCUGuu-UUACC-GCGGGUCua--GCGGAg -5'
28742 5' -53.6 NC_006146.1 + 112216 0.7 0.824648
Target:  5'- uGGACAGGGUGGCgGCCUGGGUgGUUg- -3'
miRNA:   3'- -UCUGUUUUACCG-CGGGUCUAgCGGag -5'
28742 5' -53.6 NC_006146.1 + 168444 0.7 0.824648
Target:  5'- gGGGCAGGGcUGGCGCCgGGccgCGCCc- -3'
miRNA:   3'- -UCUGUUUU-ACCGCGGgUCua-GCGGag -5'
28742 5' -53.6 NC_006146.1 + 68331 0.69 0.887484
Target:  5'- cGAgAGGAUGGCGUCgAGGaCGgCCUCc -3'
miRNA:   3'- uCUgUUUUACCGCGGgUCUaGC-GGAG- -5'
28742 5' -53.6 NC_006146.1 + 170307 0.7 0.824648
Target:  5'- gGGGCAGGGcUGGCGCCgGGccgCGCCc- -3'
miRNA:   3'- -UCUGUUUU-ACCGCGGgUCua-GCGGag -5'
28742 5' -53.6 NC_006146.1 + 167512 0.7 0.824648
Target:  5'- gGGGCAGGGcUGGCGCCgGGccgCGCCc- -3'
miRNA:   3'- -UCUGUUUU-ACCGCGGgUCua-GCGGag -5'
28742 5' -53.6 NC_006146.1 + 112114 0.74 0.606434
Target:  5'- gGGugGAGGUGGUGCUgGuGGUgGCCUCg -3'
miRNA:   3'- -UCugUUUUACCGCGGgU-CUAgCGGAG- -5'
28742 5' -53.6 NC_006146.1 + 49547 0.69 0.857759
Target:  5'- gGGGCGGAGgccacgccGGCcagGCCCAGcAUgGCCUCg -3'
miRNA:   3'- -UCUGUUUUa-------CCG---CGGGUC-UAgCGGAG- -5'
28742 5' -53.6 NC_006146.1 + 4790 0.74 0.637732
Target:  5'- cAGuACGAGuuucuGCGCCCGGggCGCCUCa -3'
miRNA:   3'- -UC-UGUUUuac--CGCGGGUCuaGCGGAG- -5'
28742 5' -53.6 NC_006146.1 + 129117 0.7 0.824648
Target:  5'- aGGGCcugaGAGcgGGCGCCCGGGcgcaggGCCUCc -3'
miRNA:   3'- -UCUG----UUUuaCCGCGGGUCUag----CGGAG- -5'
28742 5' -53.6 NC_006146.1 + 92444 0.69 0.880392
Target:  5'- gAGACuguAGcGGCGCCgGGAUgGCCa- -3'
miRNA:   3'- -UCUGuu-UUaCCGCGGgUCUAgCGGag -5'
28742 5' -53.6 NC_006146.1 + 113668 0.68 0.900961
Target:  5'- cGACGAGagGUGGCucggGCCCGGGcccgGCCUCc -3'
miRNA:   3'- uCUGUUU--UACCG----CGGGUCUag--CGGAG- -5'
28742 5' -53.6 NC_006146.1 + 126941 0.73 0.658588
Target:  5'- uGGCAGGAUGGCGCucuCCGGG-CGCgUCu -3'
miRNA:   3'- uCUGUUUUACCGCG---GGUCUaGCGgAG- -5'
28742 5' -53.6 NC_006146.1 + 68739 0.71 0.797877
Target:  5'- -cGCGGGGUGGUggagGCCCAGGUgGCCa- -3'
miRNA:   3'- ucUGUUUUACCG----CGGGUCUAgCGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.