miRNA display CGI


Results 1 - 20 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28743 5' -64.9 NC_006146.1 + 125229 0.66 0.591255
Target:  5'- gCCCUUCCGCUCCCUGgcggagacGGUCUcccuggauuuuaugaAGGaCCu -3'
miRNA:   3'- -GGGGAGGUGAGGGGC--------CCGGA---------------UCC-GGc -5'
28743 5' -64.9 NC_006146.1 + 2687 0.66 0.538018
Target:  5'- gCCCCUCCcgccggccauccccACgcgcggCCCCGGGCCcuccCCGa -3'
miRNA:   3'- -GGGGAGG--------------UGa-----GGGGCCCGGauccGGC- -5'
28743 5' -64.9 NC_006146.1 + 1755 0.66 0.538018
Target:  5'- gCCCCUCCcgccggccauccccACgcgcggCCCCGGGCCcuccCCGa -3'
miRNA:   3'- -GGGGAGG--------------UGa-----GGGGCCCGGauccGGC- -5'
28743 5' -64.9 NC_006146.1 + 823 0.66 0.538018
Target:  5'- gCCCCUCCcgccggccauccccACgcgcggCCCCGGGCCcuccCCGa -3'
miRNA:   3'- -GGGGAGG--------------UGa-----GGGGCCCGGauccGGC- -5'
28743 5' -64.9 NC_006146.1 + 59245 0.66 0.540784
Target:  5'- -gCCUCCAUgggCCUggguguucaGGGCCU-GGCCGa -3'
miRNA:   3'- ggGGAGGUGa--GGGg--------CCCGGAuCCGGC- -5'
28743 5' -64.9 NC_006146.1 + 133338 0.66 0.540784
Target:  5'- aCCCCUagCCAacaaguCUCUCCGGGUCUGcuuGCCu -3'
miRNA:   3'- -GGGGA--GGU------GAGGGGCCCGGAUc--CGGc -5'
28743 5' -64.9 NC_006146.1 + 68909 0.66 0.549109
Target:  5'- gCCaCCg-CGCUCaaaauggacgagaCCgGGGCCUGGGCCc -3'
miRNA:   3'- -GG-GGagGUGAG-------------GGgCCCGGAUCCGGc -5'
28743 5' -64.9 NC_006146.1 + 149269 0.66 0.549109
Target:  5'- -gCCgugCCGCUCCgcguaggCCGGGuCCUcGGCCa -3'
miRNA:   3'- ggGGa--GGUGAGG-------GGCCC-GGAuCCGGc -5'
28743 5' -64.9 NC_006146.1 + 9151 0.66 0.549109
Target:  5'- cCCCCUcggaccucagccgCCAC-CCCCGGGCUacaaGGGUUc -3'
miRNA:   3'- -GGGGA-------------GGUGaGGGGCCCGGa---UCCGGc -5'
28743 5' -64.9 NC_006146.1 + 3619 0.66 0.538018
Target:  5'- gCCCCUCCcgccggccauccccACgcgcggCCCCGGGCCcuccCCGa -3'
miRNA:   3'- -GGGGAGG--------------UGa-----GGGGCCCGGauccGGC- -5'
28743 5' -64.9 NC_006146.1 + 19939 0.66 0.540784
Target:  5'- aUCaaUCCGgcCUCCCUGGGCagaucaGGGCCGg -3'
miRNA:   3'- -GGggAGGU--GAGGGGCCCGga----UCCGGC- -5'
28743 5' -64.9 NC_006146.1 + 71514 0.66 0.547255
Target:  5'- cCCCCUggCCgACUCgcuCCUGGGCCUcaacgcgcggcccgGGcGCCGa -3'
miRNA:   3'- -GGGGA--GG-UGAG---GGGCCCGGA--------------UC-CGGC- -5'
28743 5' -64.9 NC_006146.1 + 18358 0.66 0.587481
Target:  5'- aCCCCUUUgguggcauGCUCaCCCuGGuCCUGguGGCCGg -3'
miRNA:   3'- -GGGGAGG--------UGAG-GGGcCC-GGAU--CCGGC- -5'
28743 5' -64.9 NC_006146.1 + 10997 0.66 0.587481
Target:  5'- gCCCC-CCAuCUUCgaGGGCCccGGCCu -3'
miRNA:   3'- -GGGGaGGU-GAGGggCCCGGauCCGGc -5'
28743 5' -64.9 NC_006146.1 + 137574 0.66 0.568682
Target:  5'- gCCCCggagcacCCGgaCCCCGGaGCCccAGGaCCGa -3'
miRNA:   3'- -GGGGa------GGUgaGGGGCC-CGGa-UCC-GGC- -5'
28743 5' -64.9 NC_006146.1 + 110006 0.66 0.568682
Target:  5'- --gCUCCuggaUCCaCUGGGCCccAGGCCGg -3'
miRNA:   3'- gggGAGGug--AGG-GGCCCGGa-UCCGGC- -5'
28743 5' -64.9 NC_006146.1 + 91747 0.66 0.568682
Target:  5'- -gCCUCCGUUCUCCGGGUucUUGGGUgGg -3'
miRNA:   3'- ggGGAGGUGAGGGGCCCG--GAUCCGgC- -5'
28743 5' -64.9 NC_006146.1 + 158060 0.66 0.568682
Target:  5'- gCCCCaggCGcCUCCUCGGGUCc-GGCCGc -3'
miRNA:   3'- -GGGGag-GU-GAGGGGCCCGGauCCGGC- -5'
28743 5' -64.9 NC_006146.1 + 127552 0.66 0.567745
Target:  5'- cCCCCUgCCacgggcugcgccuGCUggCCCUGGGCggccgAGGCCGc -3'
miRNA:   3'- -GGGGA-GG-------------UGA--GGGGCCCGga---UCCGGC- -5'
28743 5' -64.9 NC_006146.1 + 106466 0.66 0.56307
Target:  5'- gCCCCUCUGuCUCCuggcagcguacgccgCCGuGGCCccGGCCu -3'
miRNA:   3'- -GGGGAGGU-GAGG---------------GGC-CCGGauCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.