miRNA display CGI


Results 1 - 20 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28743 5' -64.9 NC_006146.1 + 157913 1.1 0.000564
Target:  5'- cCCCCUCCACUCCCCGGGCCUAGGCCGa -3'
miRNA:   3'- -GGGGAGGUGAGGGGCCCGGAUCCGGC- -5'
28743 5' -64.9 NC_006146.1 + 142524 1.1 0.000564
Target:  5'- cCCCCUCCACUCCCCGGGCCUAGGCCGa -3'
miRNA:   3'- -GGGGAGGUGAGGGGCCCGGAUCCGGC- -5'
28743 5' -64.9 NC_006146.1 + 154835 1.1 0.000564
Target:  5'- cCCCCUCCACUCCCCGGGCCUAGGCCGa -3'
miRNA:   3'- -GGGGAGGUGAGGGGCCCGGAUCCGGC- -5'
28743 5' -64.9 NC_006146.1 + 151757 1.1 0.000564
Target:  5'- cCCCCUCCACUCCCCGGGCCUAGGCCGa -3'
miRNA:   3'- -GGGGAGGUGAGGGGCCCGGAUCCGGC- -5'
28743 5' -64.9 NC_006146.1 + 145602 1.1 0.000564
Target:  5'- cCCCCUCCACUCCCCGGGCCUAGGCCGa -3'
miRNA:   3'- -GGGGAGGUGAGGGGCCCGGAUCCGGC- -5'
28743 5' -64.9 NC_006146.1 + 148680 0.99 0.003522
Target:  5'- cCCCCUCCACUCCCCGGGCCUA-GCCGa -3'
miRNA:   3'- -GGGGAGGUGAGGGGCCCGGAUcCGGC- -5'
28743 5' -64.9 NC_006146.1 + 103560 0.83 0.044448
Target:  5'- aCCCCgaggauggGCUCgCCCGGGCCUGGGCCGg -3'
miRNA:   3'- -GGGGagg-----UGAG-GGGCCCGGAUCCGGC- -5'
28743 5' -64.9 NC_006146.1 + 57196 0.81 0.06162
Target:  5'- gUCCCggcugCCGCcgccgUCCCCGGGCCggAGGCCGg -3'
miRNA:   3'- -GGGGa----GGUG-----AGGGGCCCGGa-UCCGGC- -5'
28743 5' -64.9 NC_006146.1 + 1430 0.8 0.075213
Target:  5'- cCCCCUCCGC-CCCCGaGGCCcccaggggAGGCCc -3'
miRNA:   3'- -GGGGAGGUGaGGGGC-CCGGa-------UCCGGc -5'
28743 5' -64.9 NC_006146.1 + 3294 0.8 0.075213
Target:  5'- cCCCCUCCGC-CCCCGaGGCCcccaggggAGGCCc -3'
miRNA:   3'- -GGGGAGGUGaGGGGC-CCGGa-------UCCGGc -5'
28743 5' -64.9 NC_006146.1 + 499 0.8 0.075213
Target:  5'- cCCCCUCCGC-CCCCGaGGCCcccaggggAGGCCc -3'
miRNA:   3'- -GGGGAGGUGaGGGGC-CCGGa-------UCCGGc -5'
28743 5' -64.9 NC_006146.1 + 2362 0.8 0.075213
Target:  5'- cCCCCUCCGC-CCCCGaGGCCcccaggggAGGCCc -3'
miRNA:   3'- -GGGGAGGUGaGGGGC-CCGGa-------UCCGGc -5'
28743 5' -64.9 NC_006146.1 + 119034 0.79 0.091655
Target:  5'- uCCCCUCUucauccccaUCCCCGGGCUcGGGCCa -3'
miRNA:   3'- -GGGGAGGug-------AGGGGCCCGGaUCCGGc -5'
28743 5' -64.9 NC_006146.1 + 117782 0.78 0.11147
Target:  5'- aCCgUCgCGCUcCCCCGGGCC-GGGCCGc -3'
miRNA:   3'- gGGgAG-GUGA-GGGGCCCGGaUCCGGC- -5'
28743 5' -64.9 NC_006146.1 + 15421 0.77 0.122822
Target:  5'- uCCCCU-CGC-CCCUGGGCCUcAGGCCc -3'
miRNA:   3'- -GGGGAgGUGaGGGGCCCGGA-UCCGGc -5'
28743 5' -64.9 NC_006146.1 + 12342 0.77 0.122822
Target:  5'- uCCCCU-CGC-CCCUGGGCCUcAGGCCc -3'
miRNA:   3'- -GGGGAgGUGaGGGGCCCGGA-UCCGGc -5'
28743 5' -64.9 NC_006146.1 + 24655 0.77 0.122822
Target:  5'- uCCCCU-CGC-CCCUGGGCCUcAGGCCc -3'
miRNA:   3'- -GGGGAgGUGaGGGGCCCGGA-UCCGGc -5'
28743 5' -64.9 NC_006146.1 + 27733 0.77 0.122822
Target:  5'- uCCCCU-CGC-CCCUGGGCCUcAGGCCc -3'
miRNA:   3'- -GGGGAgGUGaGGGGCCCGGA-UCCGGc -5'
28743 5' -64.9 NC_006146.1 + 18499 0.77 0.122822
Target:  5'- uCCCCU-CGC-CCCUGGGCCUcAGGCCc -3'
miRNA:   3'- -GGGGAgGUGaGGGGCCCGGA-UCCGGc -5'
28743 5' -64.9 NC_006146.1 + 21577 0.77 0.122822
Target:  5'- uCCCCU-CGC-CCCUGGGCCUcAGGCCc -3'
miRNA:   3'- -GGGGAgGUGaGGGGCCCGGA-UCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.